CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX71796
CDX89063
CDX97739
CDY30157
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28050.1	CDX97739	AT3G16310.1	21798944
AT3G28050.1	CDY30157	AT3G16310.1	21798944
AT3G28050.1	CDX67837	AT3G60600.1	21798944
AT3G28050.1	CDX71796	AT3G60600.1	21798944
AT3G28050.1	CDX89063	AT3G60600.1	21798944
AT3G28050.1	CDY41153	AT3G60600.1	21798944
AT3G28050.1	CDY48365	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69634	Canola	extracellular	23.16	98.84
CDY00140	Canola	golgi, plasma membrane, vacuole	92.64	92.14
CDY20031	Canola	plasma membrane	92.1	91.6
AT3G28050.1	Thale cress	plasma membrane	91.55	91.55
Solyc02g087060.2.1	Tomato	golgi, plasma membrane, vacuole	60.76	61.26
VIT_14s0066g01650.t01	Wine grape	golgi, plasma membrane, vacuole	57.49	58.61
KRG88846	Soybean	plasma membrane	57.77	57.14
KRH75315	Soybean	plasma membrane	56.68	56.68
CDY44584	Canola	golgi, plasma membrane, plastid	17.71	52.0
CDY49754	Canola	plasma membrane	47.96	51.61
CDX85184	Canola	plasma membrane	49.86	50.41
CDY13131	Canola	plasma membrane, vacuole	23.43	48.59
CDX72470	Canola	plasma membrane	29.97	47.41
CDX95070	Canola	plasma membrane	29.97	47.41
CDX85185	Canola	golgi, plasma membrane, vacuole	46.05	47.21
CDY53118	Canola	plasma membrane	43.05	47.02
CDX86450	Canola	plasma membrane	47.96	46.93
CDY59916	Canola	cytosol, plasma membrane, plastid	13.62	46.3
CDY15932	Canola	golgi, nucleus, plasma membrane	43.6	44.08
CDY44581	Canola	plasma membrane	40.05	44.01
CDX99640	Canola	golgi, plasma membrane, vacuole	41.14	43.9
CDX99641	Canola	plasma membrane	41.69	43.84
CDY15933	Canola	plasma membrane	41.69	43.71
CDY11676	Canola	golgi, plasma membrane, vacuole	43.05	43.17
CDY15931	Canola	extracellular, mitochondrion, plasma membrane, vacuole	11.17	43.16
CDY11678	Canola	plasma membrane	42.51	42.86
CDY59918	Canola	extracellular	15.26	42.75
CDY11677	Canola	golgi, nucleus, plasma membrane	43.32	42.74
CDX67449	Canola	golgi, plasma membrane, vacuole	42.23	42.47
CDY11675	Canola	golgi, nucleus, plasma membrane	32.97	42.31
CDY36827	Canola	golgi, plasma membrane, plastid	42.23	41.89
CDY66864	Canola	golgi, plasma membrane, vacuole	40.05	41.88
CDX99639	Canola	plasma membrane	22.89	41.79
CDX86451	Canola	cytosol	49.59	40.9
CDY38468	Canola	extracellular	12.81	39.83
CDY04006	Canola	cytosol, peroxisome, plasma membrane	34.88	36.26
CDX67447	Canola	plasma membrane	42.51	33.12
CDY42998	Canola	golgi, plasma membrane	33.52	32.8
CDY23506	Canola	plasma membrane	33.24	32.71
CDY03759	Canola	plasma membrane	32.97	32.27
CDX68349	Canola	plasma membrane	32.7	32.17
CDY38802	Canola	golgi, plasma membrane, vacuole	32.7	32.0
CDY61698	Canola	plasma membrane	29.97	29.49
CDY36829	Canola	plasma membrane	27.79	28.1
CDY65646	Canola	extracellular, plasma membrane	22.07	26.47
CDY11606	Canola	plasma membrane	32.43	25.32
CDX67448	Canola	plasma membrane	43.6	21.68

Protein Annotations

EnsemblPlants:CDY04005	EnsemblPlantsGene:GSBRNA2T00117556001	GO:A0A078EPV3	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	InterPro:EamA_dom
InterPro:WAT1-related	PANTHER:PTHR31218	PANTHER:PTHR31218:SF64	PFAM:PF00892	ProteinID:CDY04005	ProteinID:CDY04005.1
SEG:seg	SUPFAM:SSF103481	TMHMM:TMhelix	UniParc:UPI0004EF3475	MapMan:24.2.1.5	:

Description

BnaC02g37200D

Coordinates

chrLK031948:+:317049..319925

Molecular Weight (calculated)

40320.6 Da

IEP (calculated)

8.325

GRAVY (calculated)

0.540

Length

367 amino acids

Sequence
(BLAST)

001: MTRKYFQREV LPVTALVIME CANVALNTLF KAATLQGMGF HVFIVYSYGL AALLLLPSLF FSYRSRTLPP MNFSILYKVV LLGLIGCCSN IMGYTGINYS
101: SPTLASAISN LTPAFTFLLA ILFRMESVSF KRTSSVAKML GTIVSIGGAF IVTLYNGPVV INMSPPSISL RSQSPNHDWI IGAAFLAVEY FMVPLWYIVQ
201: TQIMREYPSE FTVVCYYSFG VSFWTGLATL FTEGSDLSAW KIKPNIALVS IVCSGLFGSC INNTIHTWAL RIKGPLFVAM FKPLSIAIAV AMGVIFLRDS
301: LYIGSLIGAT VITIGFYTVM WGKAKEMALV EDNNKANNED ANEADLDSPS GSQKAPLLES YKNDEHV

Best Arabidopsis Sequence Match ( AT3G28050.1 )
(BLAST)

001: MARKYFQREV LPVTALVIME CANVGLNTLF KAATLKGMSF HVFIVYSYGL AALLLLPSLF CSFRSRTLPP MNFSILYKIV LLGIIGCCSN IMGYTGINYS
101: SPTLASAISN LTPAFTFLLA VVFRMESVSF KRTSSVAKML GTVVSIGGAF IVTLYNGPVV IAKSPPSVSL RSQSTNPNWI LGAGFLAVEY FCVPLWYIVQ
201: TQIMREYPAE FTVVCFYSIG VSFWTALVTL FTEGNDLGAW KIKPNIALVS IVCSGLFGSC INNTIHTWAL RIKGPLFVAM FKPLSIAIAV AMGVIFLRDS
301: LYIGSLIGAT VITIGFYTVM WGKAKEVALV EDDNKANHEE ANEADLDSPS GSQKAPLLES YKNDEHV

Arabidopsis Description

WAT1-related protein [Source:UniProtKB/TrEMBL;Acc:A0A178VL75]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.