Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G28080.1 | CDY36586 | AT1G15760.1 | 21798944 |
| AT3G28080.1 | CDY61373 | AT1G15760.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72470 | Canola | plasma membrane | 100.0 | 100.0 |
| CDY49754 | Canola | plasma membrane | 99.14 | 67.45 |
| CDY04006 | Canola | cytosol, peroxisome, plasma membrane | 99.57 | 65.44 |
| CDX85185 | Canola | golgi, plasma membrane, vacuole | 84.48 | 54.75 |
| CDY13131 | Canola | plasma membrane, vacuole | 40.95 | 53.67 |
| CDX86450 | Canola | plasma membrane | 86.21 | 53.33 |
| AT3G28100.1 | Thale cress | plasma membrane | 80.17 | 52.69 |
| AT3G28070.1 | Thale cress | golgi, plasma membrane, plastid, vacuole | 78.02 | 50.28 |
| CDY59916 | Canola | cytosol, plasma membrane, plastid | 23.28 | 50.0 |
| AT3G28080.1 | Thale cress | golgi, plasma membrane, vacuole | 76.72 | 49.72 |
| CDY15931 | Canola | extracellular, mitochondrion, plasma membrane, vacuole | 17.24 | 42.11 |
| CDY38468 | Canola | extracellular | 18.1 | 35.59 |
| CDX85184 | Canola | plasma membrane | 50.43 | 32.23 |
| CDY53118 | Canola | plasma membrane | 45.26 | 31.25 |
| CDY04005 | Canola | plasma membrane | 47.41 | 29.97 |
| CDY00140 | Canola | golgi, plasma membrane, vacuole | 47.41 | 29.81 |
| CDY20031 | Canola | plasma membrane | 46.55 | 29.27 |
| CDY66864 | Canola | golgi, plasma membrane, vacuole | 39.66 | 26.21 |
| CDX86451 | Canola | cytosol | 50.0 | 26.07 |
| CDY36827 | Canola | golgi, plasma membrane, plastid | 41.38 | 25.95 |
| CDY11678 | Canola | plasma membrane | 40.52 | 25.82 |
| CDX67449 | Canola | golgi, plasma membrane, vacuole | 40.09 | 25.48 |
| CDY11676 | Canola | golgi, plasma membrane, vacuole | 39.66 | 25.14 |
| CDY15932 | Canola | golgi, nucleus, plasma membrane | 39.22 | 25.07 |
| CDY44581 | Canola | plasma membrane | 35.78 | 24.85 |
| CDX99640 | Canola | golgi, plasma membrane, vacuole | 36.64 | 24.71 |
| CDX99641 | Canola | plasma membrane | 36.64 | 24.36 |
| CDY15933 | Canola | plasma membrane | 36.64 | 24.29 |
| CDY11677 | Canola | golgi, nucleus, plasma membrane | 38.79 | 24.19 |
| CDY65646 | Canola | extracellular, plasma membrane | 26.29 | 19.93 |
| CDY38802 | Canola | golgi, plasma membrane, vacuole | 30.6 | 18.93 |
| CDX99639 | Canola | plasma membrane | 16.38 | 18.91 |
| CDY03759 | Canola | plasma membrane | 30.17 | 18.67 |
| CDY11675 | Canola | golgi, nucleus, plasma membrane | 22.84 | 18.53 |
| CDY23506 | Canola | plasma membrane | 29.31 | 18.23 |
| CDX68349 | Canola | plasma membrane | 29.31 | 18.23 |
| CDX67447 | Canola | plasma membrane | 36.64 | 18.05 |
| CDY42998 | Canola | golgi, plasma membrane | 28.88 | 17.87 |
| CDY61698 | Canola | plasma membrane | 25.86 | 16.09 |
| CDY11606 | Canola | plasma membrane | 29.74 | 14.68 |
| CDX67448 | Canola | plasma membrane | 42.24 | 13.28 |
| CDY36829 | Canola | plasma membrane | 19.83 | 12.67 |
| CDY59918 | Canola | extracellular | 6.03 | 10.69 |
| CDY44584 | Canola | golgi, plasma membrane, plastid | 0.0 | 0.0 |
| CDY69634 | Canola | extracellular | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX95070 | EnsemblPlantsGene:GSBRNA2T00100590001 | GO:A0A078E0E8 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 | InterPro:WAT1-related |
| PANTHER:PTHR31218 | PANTHER:PTHR31218:SF64 | ProteinID:CDX95070 | ProteinID:CDX95070.1 | SEG:seg | SUPFAM:SSF103481 |
| TMHMM:TMhelix | UniParc:UPI0004EE3CF1 | MapMan:24.2.1.5 | : | : | : |
Description
BnaC05g06010D
Coordinates
chrLK031886:+:968659..969692
Molecular Weight (calculated)
25794.0 Da
IEP (calculated)
8.062
GRAVY (calculated)
0.662
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKVNFKERS SVAKVMGTVL SLVGAPVVVL YHGPRVFVAS SPPYLHFRQL SPSLSSSNSD WIIGGCLLTI KDIFVSISFI LQAHIMTEYP AAFTVSFFYS
101: MCVSILTSLT GLVVEKDNPS IWIIRFDITL ISIVTMGIFT PVYYVIHSWT VRYKGPLYLA IFKPLSILIA VVMSAIFLGD SLYLGCLIGG VLITLGFYAV
201: MWGKANEDKT RLLTLLENEK TPLLLNHNDD QI
101: MCVSILTSLT GLVVEKDNPS IWIIRFDITL ISIVTMGIFT PVYYVIHSWT VRYKGPLYLA IFKPLSILIA VVMSAIFLGD SLYLGCLIGG VLITLGFYAV
201: MWGKANEDKT RLLTLLENEK TPLLLNHNDD QI
001: MYVITGYIGI EYSSPTLASA INNITPALTF ILAIIFRMEK VSFKERSSLA KLMGTILSLI GALVVIFYHG PRVFLASSPP YVNFRQFSPP LSSSNSDWLI
101: GGALLTMQGI FVSVSFILQA HIMSVYPAAF RVSFLYTVCV SIVTSTIGLV VEKNNPSVWI IHFDITLITI VTMAIVTSVY YVIHSWTVRH KGPLYLAIFK
201: PLSILIAVVM GAIFLNDSLY LGCLIGGILI TLGFYAVMWG KANEEKDQLS FSEKEKTPLL LNRKNDQV
101: GGALLTMQGI FVSVSFILQA HIMSVYPAAF RVSFLYTVCV SIVTSTIGLV VEKNNPSVWI IHFDITLITI VTMAIVTSVY YVIHSWTVRH KGPLYLAIFK
201: PLSILIAVVM GAIFLNDSLY LGCLIGGILI TLGFYAVMWG KANEEKDQLS FSEKEKTPLL LNRKNDQV
Arabidopsis Description
WAT1-related protein At3g28070 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYZ7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.