CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:

plastid 1
mitochondrion 1
golgi 3
extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY36586
CDY61373

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28080.1	CDY36586	AT1G15760.1	21798944
AT3G28080.1	CDY61373	AT1G15760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025321.1-P	Field mustard	plasma membrane	96.09	91.73
CDX86450	Canola	plasma membrane	96.09	91.73
CDY49754	Canola	plasma membrane	82.4	86.51
CDX95070	Canola	plasma membrane	54.75	84.48
CDX72470	Canola	plasma membrane	54.75	84.48
AT3G28100.1	Thale cress	plasma membrane	78.77	79.89
AT3G28070.1	Thale cress	golgi, plasma membrane, plastid, vacuole	75.14	74.72
AT3G28080.1	Thale cress	golgi, plasma membrane, vacuole	74.58	74.58
CDY04006	Canola	cytosol, peroxisome, plasma membrane	62.01	62.89
CDY69634	Canola	extracellular	12.85	53.49
CDY44584	Canola	golgi, plasma membrane, plastid	18.44	52.8
CDY13131	Canola	plasma membrane, vacuole	25.98	52.54
CDX85184	Canola	plasma membrane	51.4	50.69
CDY53118	Canola	plasma membrane	47.21	50.3
CDY59918	Canola	extracellular	17.88	48.85
CDY59916	Canola	cytosol, plasma membrane, plastid	13.97	46.3
CDY04005	Canola	plasma membrane	47.21	46.05
CDY20031	Canola	plasma membrane	46.93	45.53
CDY00140	Canola	golgi, plasma membrane, vacuole	46.93	45.53
CDY11678	Canola	plasma membrane	44.69	43.96
CDX67449	Canola	golgi, plasma membrane, vacuole	44.69	43.84
CDY38468	Canola	extracellular	14.25	43.22
CDY15932	Canola	golgi, nucleus, plasma membrane	43.58	42.98
CDY44581	Canola	plasma membrane	39.66	42.52
CDX99640	Canola	golgi, plasma membrane, vacuole	40.78	42.44
CDY11676	Canola	golgi, plasma membrane, vacuole	42.46	41.53
CDX86451	Canola	cytosol	51.12	41.12
CDX99641	Canola	plasma membrane	39.94	40.97
CDY11677	Canola	golgi, nucleus, plasma membrane	42.46	40.86
CDY15933	Canola	plasma membrane	39.94	40.86
CDY36827	Canola	golgi, plasma membrane, plastid	42.18	40.81
CDY66864	Canola	golgi, plasma membrane, vacuole	39.94	40.74
CDY11675	Canola	golgi, nucleus, plasma membrane	32.12	40.21
CDY15931	Canola	extracellular, mitochondrion, plasma membrane, vacuole	10.34	38.95
CDX99639	Canola	plasma membrane	20.95	37.31
CDX67447	Canola	plasma membrane	40.22	30.57
CDY36829	Canola	plasma membrane	29.05	28.65
CDY03759	Canola	plasma membrane	27.93	26.67
CDX68349	Canola	plasma membrane	27.65	26.54
CDY38802	Canola	golgi, plasma membrane, vacuole	27.65	26.4
CDY42998	Canola	golgi, plasma membrane	27.65	26.4
CDY23506	Canola	plasma membrane	27.37	26.27
CDY61698	Canola	plasma membrane	25.98	24.93
CDY65646	Canola	extracellular, plasma membrane	19.55	22.88
CDX67448	Canola	plasma membrane	43.85	21.27
CDY11606	Canola	plasma membrane	27.09	20.64

Protein Annotations

EnsemblPlants:CDX85185	EnsemblPlantsGene:GSBRNA2T00142790001	GO:A0A078D7R1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	InterPro:EamA_dom
InterPro:WAT1-related	PANTHER:PTHR31218	PANTHER:PTHR31218:SF64	PFAM:PF00892	ProteinID:CDX85185	ProteinID:CDX85185.1
SEG:seg	SUPFAM:SSF103481	TMHMM:TMhelix	UniParc:UPI0004EB21F5	MapMan:24.2.1.5	:

Description

BnaC07g24960D

Coordinates

chrLK031841:+:22288..25143

Molecular Weight (calculated)

39264.7 Da

IEP (calculated)

9.807

GRAVY (calculated)

0.715

Length

358 amino acids

Sequence
(BLAST)

001: MAGAVSLWRR EATFLTAMLA SETGIVGLNI LFKAATSKGL NSYSFLGYSY LLASLLLSPS HLFSNRSRSL PPLSFSILSK IGLLGLVGST YVITSYIGVK
101: YSNPTLASAI SNITPAVTFI LAVIFRMEKV RLKERSSVAK VMGTILSLVG ALVVVLYHGP RLFIVSSAPN LNFHQLSPSL SSSNSDWIIG GCLLTIRDIF
201: VSVSFVLQAH IMSEYPAAFT VSFFYTLFVS IITSLTGLVV ERNNPSVWII RFDITLICIL AMGIFTPVYY VIRSWTVRYK GPLYLAIFKP LSILIAVIMS
301: ATFLGDSLYL GCLIGGVLIT IGFYAVMWGK ANEEKTRLLL LAEKENSHLL LNHNDDQI

Best Arabidopsis Sequence Match ( AT3G28100.1 )
(BLAST)

001: MARTVSLWRR EAVFLTAMLA TETGVVGIST LFKVATSKGL NLYAFLGYSY LLASLLLLPS LFFTDRSRSL PPLSLSILSK IGLLGLLGSM YVITGYIGIE
101: YSSPTLASAI SNITPALTFI LAIIFRMEKV SFKERSSVAK VMGTILSLIG ALVVVLYHGP RVFVASSPPY INFRQLSPPL SSSNSDWLIG GALLTIRDIF
201: VSVSFILQAK IMSTYPAAFT VSFLYIVSVS IVTSMIGLVV EKNNPSVWII RFDITLITIV TMAIITSVYY VIHSWTVRHK GPLYLAIFKP LSILIAVVMS
301: AVFLNDSLYL GCLIGGLLIT LGFYAVMWGK ANEEKDQLLL VSGKERTPLL LNG

Arabidopsis Description

WAT1-related protein At3g28100 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRS5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.