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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:
  • nucleus 1
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 2
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:golgi, plasma membrane, vacuole
Any Predictor:golgi, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:golgi
PProwler:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra030337.1-P Field mustard golgi, nucleus, plasma membrane 95.35 90.36
CDY15932 Canola golgi, nucleus, plasma membrane 95.35 90.36
CDY11677 Canola golgi, nucleus, plasma membrane 81.4 75.27
AT5G40240.2 Thale cress plasma membrane 80.81 72.77
CDY11676 Canola golgi, plasma membrane, vacuole 75.29 70.77
CDY15931 Canola extracellular, mitochondrion, plasma membrane, vacuole 19.48 70.53
CDY44581 Canola plasma membrane 68.31 70.36
CDY36827 Canola golgi, plasma membrane, plastid 75.58 70.27
CDY11678 Canola plasma membrane 74.13 70.05
CDX67449 Canola golgi, plasma membrane, vacuole 73.55 69.32
CDX99641 Canola plasma membrane 69.77 68.77
CDY15933 Canola plasma membrane 69.48 68.29
CDY38468 Canola extracellular 23.26 67.8
CDY66864 Canola golgi, plasma membrane, vacuole 67.73 66.38
CDY11675 Canola golgi, nucleus, plasma membrane 54.65 65.73
CDY36829 Canola plasma membrane 52.33 49.59
CDX99639 Canola plasma membrane 28.78 49.25
VIT_14s0066g01640.t01 Wine grape plasma membrane 50.87 48.75
CDX67447 Canola plasma membrane 65.99 48.2
KRH46524 Soybean plasma membrane 50.0 46.87
CDY69634 Canola extracellular 11.34 45.35
CDY44584 Canola golgi, plasma membrane, plastid 16.28 44.8
CDY49754 Canola plasma membrane 41.57 41.94
CDY00140 Canola golgi, plasma membrane, vacuole 44.77 41.73
CDY20031 Canola plasma membrane 44.48 41.46
CDY04005 Canola plasma membrane 43.9 41.14
CDX85184 Canola plasma membrane 43.31 41.05
CDX85185 Canola golgi, plasma membrane, vacuole 42.44 40.78
CDX86450 Canola plasma membrane 43.6 40.0
CDY53118 Canola plasma membrane 38.37 39.29
CDY59918 Canola extracellular 14.24 37.4
CDX72470 Canola plasma membrane 24.71 36.64
CDX95070 Canola plasma membrane 24.71 36.64
CDY13131 Canola plasma membrane, vacuole 18.6 36.16
CDX67448 Canola plasma membrane 75.87 35.37
CDX86451 Canola cytosol 44.19 34.16
CDY42998 Canola golgi, plasma membrane 31.98 29.33
CDY03759 Canola plasma membrane 31.69 29.07
CDY23506 Canola plasma membrane 31.1 28.69
CDX68349 Canola plasma membrane 31.1 28.69
CDY38802 Canola golgi, plasma membrane, vacuole 30.81 28.27
CDY59916 Canola cytosol, plasma membrane, plastid 8.72 27.78
CDY04006 Canola cytosol, peroxisome, plasma membrane 28.49 27.76
CDY61698 Canola plasma membrane 29.94 27.61
CDY65646 Canola extracellular, plasma membrane 22.09 24.84
CDY11606 Canola plasma membrane 30.81 22.55
Protein Annotations
EnsemblPlants:CDX99640EnsemblPlantsGene:GSBRNA2T00108153001GO:A0A078EC41GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0022857InterPro:EamA_dom
InterPro:WAT1-relatedPANTHER:PTHR31218PANTHER:PTHR31218:SF48PFAM:PF00892ProteinID:CDX99640ProteinID:CDX99640.1
SEG:segTMHMM:TMhelixUniParc:UPI0004EE18F8MapMan:24.2.1.5::
Description
BnaC04g33970D
Coordinates
chrLK031912:+:579860..581889
Molecular Weight (calculated)
37768.5 Da
IEP (calculated)
9.226
GRAVY (calculated)
0.665
Length
344 amino acids
Sequence
(BLAST)
001: MRGAREETVA WRYFSRDVVP FAAMFTVECT TVGANTLYKA ASLRGLSFYV FVFYSYLVST LLLLPLSLIF GRSRRLPPAK SPLFFKIFIL GLLGFMSQIA
101: ACKGIEYSSP TLASAISNLT PAFTFTNFRM EQVRLRSSAS QAKIIGAILS ISGALVIVLY KGPKVLSGAS FTSSSSLPIS LDQNLTSSDS SWMIGGLFLA
201: SQYFLLSVWY ILQTRVMETY PEEIRVVFFY NLFAIIISAP VCLFLERNLT SWVLKPDISL AAIVYSGFFV SMPLSIAIAV VMGAIFLGDA FHLGSVIGSM
301: ILCFGFYTVI WGKAKEDSTK TVAGSENSPL LLTHVVGDED LLVR
Best Arabidopsis Sequence Match ( AT4G15540.2 )
(BLAST)
001: MREETVSWKY FKRDVVPFTA MIAIECTTVG SSILYKAATL RGFSFYVFVF YAYVGATLVL LLLSLIFGRS RSLPTAKSSL FFKIFLLALL GLTSRVAGCK
101: GIEYSSPTLS SAISNLTPAF TFILAIFFRM EQVMLRSSAT QAKIIGTIVS ISGALVIVLY KGPKLLVAAS FTSFESSWII GGLLLGLQFL LLSVWFILQT
201: HIMEIYPEEI AVVFCYNLCA TLISGTVCLL VEKDLNSWQL KPGFSLASVI YSGLFDTSLG SVIHTWGLHV KGPVYISLFK PLSIAIAVAM AAIFLGDTLH
301: LGSVIGSVIL SFGFYTVIWG KAREDSTKTV SDSEQSLLLP SHDREED
Arabidopsis Description
WAT1-related protein At4g15540 [Source:UniProtKB/Swiss-Prot;Acc:F4JK59]
SUBAcon: [plasma membrane,golgi,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.