CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX71796
CDX89063
CDX97739
CDY30157
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G28050.1	CDX97739	AT3G16310.1	21798944
AT3G28050.1	CDY30157	AT3G16310.1	21798944
AT3G28050.1	CDX67837	AT3G60600.1	21798944
AT3G28050.1	CDX71796	AT3G60600.1	21798944
AT3G28050.1	CDX89063	AT3G60600.1	21798944
AT3G28050.1	CDY41153	AT3G60600.1	21798944
AT3G28050.1	CDY48365	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20031	Canola	plasma membrane	98.92	98.92
CDY04005	Canola	plasma membrane	92.14	92.64
AT3G28050.1	Thale cress	plasma membrane	90.51	91.01
CDY69634	Canola	extracellular	20.87	89.53
Solyc02g087060.2.1	Tomato	golgi, plasma membrane, vacuole	61.52	62.36
VIT_14s0066g01650.t01	Wine grape	golgi, plasma membrane, vacuole	57.72	59.17
KRG88846	Soybean	plasma membrane	57.72	57.41
KRH75315	Soybean	plasma membrane	56.64	56.95
CDY44584	Canola	golgi, plasma membrane, plastid	17.89	52.8
CDY49754	Canola	plasma membrane	47.97	51.91
CDX85184	Canola	plasma membrane	49.86	50.69
CDX95070	Canola	plasma membrane	29.81	47.41
CDX72470	Canola	plasma membrane	29.81	47.41
CDX86450	Canola	plasma membrane	47.97	47.2
CDX85185	Canola	golgi, plasma membrane, vacuole	45.53	46.93
CDY13131	Canola	plasma membrane, vacuole	22.49	46.89
CDY53118	Canola	plasma membrane	42.55	46.73
CDY59916	Canola	cytosol, plasma membrane, plastid	13.28	45.37
CDY44581	Canola	plasma membrane	40.65	44.91
CDY15932	Canola	golgi, nucleus, plasma membrane	44.17	44.9
CDX99640	Canola	golgi, plasma membrane, vacuole	41.73	44.77
CDX99641	Canola	plasma membrane	42.28	44.7
CDY15933	Canola	plasma membrane	42.28	44.57
CDY11677	Canola	golgi, nucleus, plasma membrane	44.72	44.35
CDY11676	Canola	golgi, plasma membrane, vacuole	43.9	44.26
CDY11678	Canola	plasma membrane	43.09	43.68
CDY66864	Canola	golgi, plasma membrane, vacuole	41.19	43.3
CDX67449	Canola	golgi, plasma membrane, vacuole	42.82	43.29
CDY15931	Canola	extracellular, mitochondrion, plasma membrane, vacuole	11.11	43.16
CDY11675	Canola	golgi, nucleus, plasma membrane	33.33	43.01
CDY36827	Canola	golgi, plasma membrane, plastid	43.09	42.97
CDX99639	Canola	plasma membrane	23.04	42.29
CDY59918	Canola	extracellular	14.91	41.98
CDX86451	Canola	cytosol	49.32	40.9
CDY38468	Canola	extracellular	13.01	40.68
CDY04006	Canola	cytosol, peroxisome, plasma membrane	34.42	35.98
CDX67447	Canola	plasma membrane	42.82	33.55
CDY42998	Canola	golgi, plasma membrane	32.79	32.27
CDY03759	Canola	plasma membrane	32.79	32.27
CDY23506	Canola	plasma membrane	32.25	31.9
CDX68349	Canola	plasma membrane	31.71	31.37
CDY38802	Canola	golgi, plasma membrane, vacuole	31.71	31.2
CDY61698	Canola	plasma membrane	29.81	29.49
CDY36829	Canola	plasma membrane	28.46	28.93
CDY65646	Canola	extracellular, plasma membrane	21.95	26.47
CDY11606	Canola	plasma membrane	31.44	24.68
CDX67448	Canola	plasma membrane	44.72	22.36

Protein Annotations

EnsemblPlants:CDY00140	EnsemblPlantsGene:GSBRNA2T00109651001	GO:A0A078EDH5	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	InterPro:EamA_dom
InterPro:WAT1-related	PANTHER:PTHR31218	PANTHER:PTHR31218:SF64	PFAM:PF00892	ProteinID:CDY00140	ProteinID:CDY00140.1
SEG:seg	SUPFAM:SSF103481	TMHMM:TMhelix	UniParc:UPI0004EE8184	MapMan:24.2.1.5	:

Description

BnaC09g01610D

Coordinates

chrLK031916:-:1001068..1003818

Molecular Weight (calculated)

40328.6 Da

IEP (calculated)

7.806

GRAVY (calculated)

0.574

Length

369 amino acids

Sequence
(BLAST)

001: MAGKYFQREV LPVMALVIME CANVGLNTLF KAATLQGMSF HVFIVYSYGL AALLLLPSIF FSSRSRTLPP MNFSILYKIL VLGLIGCCSN IMGYTGINYS
101: SPTLASAISN LTPAFTFLLA ILFRLMESVS FKRTSSVAKM LGTVVSIGGA FIVTLYNGPV VISMSPPSVS LRSQSTNHNW IIGAAFLSVE YFMVPLWYIV
201: QTQIMREYPS EFTVVCYYSL GVSFWTGLVT LFTEGSDLNA WKIKPNIALV SIVCSGVFGS CINNTIHTWA LRIKGPLFVA MFKPLSIAIA VAMGVIFLHD
301: SLYIGSLIGA TVITTGFYTV MWGKAKEAAM VEDDNKANNE DATNEADLDS PLASQKAPLL ESYKNDEHV

Best Arabidopsis Sequence Match ( AT3G28050.1 )
(BLAST)

001: MARKYFQREV LPVTALVIME CANVGLNTLF KAATLKGMSF HVFIVYSYGL AALLLLPSLF CSFRSRTLPP MNFSILYKIV LLGIIGCCSN IMGYTGINYS
101: SPTLASAISN LTPAFTFLLA VVFRMESVSF KRTSSVAKML GTVVSIGGAF IVTLYNGPVV IAKSPPSVSL RSQSTNPNWI LGAGFLAVEY FCVPLWYIVQ
201: TQIMREYPAE FTVVCFYSIG VSFWTALVTL FTEGNDLGAW KIKPNIALVS IVCSGLFGSC INNTIHTWAL RIKGPLFVAM FKPLSIAIAV AMGVIFLRDS
301: LYIGSLIGAT VITIGFYTVM WGKAKEVALV EDDNKANHEE ANEADLDSPS GSQKAPLLES YKNDEHV

Arabidopsis Description

WAT1-related protein [Source:UniProtKB/TrEMBL;Acc:A0A178VL75]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.