Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027174.1-P | Field mustard | plastid | 76.89 | 97.6 |
| AT3G16310.1 | Thale cress | plastid | 68.87 | 88.75 |
| VIT_09s0002g03770.t01 | Wine grape | mitochondrion, plastid | 54.01 | 72.24 |
| KRH09922 | Soybean | endoplasmic reticulum, nucleus | 54.25 | 69.49 |
| KRH23409 | Soybean | mitochondrion | 54.25 | 69.49 |
| PGSC0003DMT400006495 | Potato | mitochondrion, plastid | 51.89 | 65.67 |
| CDX97739 | Canola | plastid | 82.78 | 52.62 |
| GSMUA_Achr6P14800_001 | Banana | plastid | 27.36 | 51.33 |
| HORVU3Hr1G026980.2 | Barley | nucleus, plastid | 33.49 | 45.66 |
| TraesCS3A01G313000.1 | Wheat | nucleus | 34.2 | 45.31 |
| TraesCS3B01G158900.1 | Wheat | nucleus | 33.96 | 45.0 |
| GSMUA_Achr4P15460_001 | Banana | mitochondrion, plastid | 37.74 | 44.69 |
| TraesCS3D01G141300.1 | Wheat | nucleus | 33.49 | 44.65 |
| Solyc03g120880.2.1 | Tomato | nucleus | 52.59 | 44.42 |
| Os01t0200500-01 | Rice | nucleus | 33.49 | 43.43 |
| EES02290 | Sorghum | nucleus, plastid | 32.55 | 42.86 |
| Zm00001d008871_P001 | Maize | mitochondrion | 32.55 | 42.86 |
| GSMUA_Achr4P08270_001 | Banana | mitochondrion | 28.3 | 42.11 |
| HORVU1Hr1G076010.1 | Barley | plastid | 26.89 | 34.44 |
| EES19830 | Sorghum | mitochondrion | 25.71 | 33.44 |
| TraesCS1D01G342600.1 | Wheat | plastid | 26.65 | 33.24 |
| Os05t0520100-00 | Rice | mitochondrion | 25.47 | 32.63 |
| TraesCS3B01G308400.1 | Wheat | plastid | 24.06 | 32.38 |
| HORVU3Hr1G071060.1 | Barley | plastid | 23.58 | 32.05 |
| Zm00001d038803_P001 | Maize | mitochondrion | 24.06 | 31.68 |
| TraesCS3D01G274500.1 | Wheat | plastid | 23.11 | 31.11 |
| TraesCS3A01G274800.1 | Wheat | plastid | 22.88 | 30.99 |
| Zm00001d010783_P001 | Maize | plastid | 25.24 | 30.92 |
| TraesCS1A01G340600.1 | Wheat | plastid | 23.82 | 29.88 |
Protein Annotations
| MapMan:23.5.1.1.6.5 | Gene3D:3.30.70.330 | GO:A0A078GY49 | UniProt:A0A078GY49 | EnsemblPlants:CDY30157 | ProteinID:CDY30157 |
| ProteinID:CDY30157.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005635 | GO:GO:0005643 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0051028 | EnsemblPlantsGene:GSBRNA2T00044736001 | InterPro:IPR007846 | InterPro:IPR012677 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF05172 | PFscan:PS51472 | PANTHER:PTHR21527 | InterPro:RBD_domain_sf | InterPro:RRM_NUP35_dom |
| SUPFAM:SSF54928 | TMHMM:TMhelix | UniParc:UPI0004EF2203 | SEG:seg | : | : |
Description
BnaC05g37050DBnaC05g37050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GY49]
Coordinates
chrLK032249:-:400061..403614
Molecular Weight (calculated)
46089.1 Da
IEP (calculated)
9.896
GRAVY (calculated)
-0.288
Length
424 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVRLSPCQV SLCSNRIKRC RSYLRFSGIP RSENSNTAVC ILRYLILSLS ISPIFSMISV NLTTELLRFL LLFIYSASKV SFKDSVLLVI MSAHRTPKTG
101: RQSLLFQDLA SPVSARRGKF STPGQAAAVS ALWRENLGGS DLPPPPMYTL DDRSDFSPES GIADYSASPD VKSETRTPFQ SSGKNFVTPG KGKLEASPSF
201: SLLSGQQQSQ QVSGSPSWWS QSKGGGSSAE QEDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQVIPT GNVQEEEWVT VYGFSPSDTN LVLREFEKCG
301: MIVKHVPGPR NANWMHILYQ NRSDAQKALS KTGMMINGVV IVGVKPVDPI QRQALNERLN NQGFMPLPPP SSTRDSEFNT ARGASSHPNY LQNGSAFSPQ
401: PTGGAMAVPS KSMVSKFVDL MFGV
101: RQSLLFQDLA SPVSARRGKF STPGQAAAVS ALWRENLGGS DLPPPPMYTL DDRSDFSPES GIADYSASPD VKSETRTPFQ SSGKNFVTPG KGKLEASPSF
201: SLLSGQQQSQ QVSGSPSWWS QSKGGGSSAE QEDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQVIPT GNVQEEEWVT VYGFSPSDTN LVLREFEKCG
301: MIVKHVPGPR NANWMHILYQ NRSDAQKALS KTGMMINGVV IVGVKPVDPI QRQALNERLN NQGFMPLPPP SSTRDSEFNT ARGASSHPNY LQNGSAFSPQ
401: PTGGAMAVPS KSMVSKFVDL MFGV
001: MSAAAHRTPK SGRQSLLFQD LASPVSARRG KFSSPGQAAA VSALWRENFG GSDLPPPPMY TLDDRSDFSP ESGIADYSAS PDAKSDRRTP FQSSGKNIVT
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV
Arabidopsis Description
NUP35Nuclear pore complex protein NUP35 [Source:UniProtKB/Swiss-Prot;Acc:O04326]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.