Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45964 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 51.44 | 91.91 |
| AT1G62880.1 | Thale cress | endoplasmic reticulum, extracellular | 46.91 | 83.21 |
| CDY26562 | Canola | endoplasmic reticulum, extracellular, vacuole | 44.86 | 79.56 |
| CDY15996 | Canola | endoplasmic reticulum | 44.44 | 78.83 |
| CDY21049 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 44.03 | 78.1 |
| CDY31264 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 44.03 | 78.1 |
| CDX98068 | Canola | endoplasmic reticulum, extracellular, vacuole | 43.21 | 76.64 |
| CDY30076 | Canola | endoplasmic reticulum, extracellular, vacuole | 43.21 | 76.64 |
| CDY32198 | Canola | plasma membrane | 35.39 | 76.11 |
| VIT_02s0025g05160.t01 | Wine grape | endoplasmic reticulum, extracellular, plasma membrane | 37.86 | 66.67 |
| PGSC0003DMT400045318 | Potato | endoplasmic reticulum, extracellular, vacuole | 37.45 | 65.47 |
| Solyc06g060550.2.1 | Tomato | extracellular, plasma membrane, vacuole | 36.63 | 64.03 |
| Bra027009.1-P | Field mustard | plasma membrane | 53.91 | 63.59 |
| KRH57311 | Soybean | endoplasmic reticulum, extracellular, plasma membrane | 34.57 | 61.31 |
| KRH28013 | Soybean | cytosol | 27.57 | 60.91 |
| KRH77425 | Soybean | plasma membrane | 32.92 | 60.15 |
| GSMUA_Achr3P11390_001 | Banana | plasma membrane | 24.69 | 59.41 |
| KRH04043 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 33.33 | 59.12 |
| GSMUA_Achr9P00470_001 | Banana | plasma membrane | 30.86 | 55.97 |
| PGSC0003DMT400032506 | Potato | endoplasmic reticulum, extracellular, vacuole | 31.69 | 55.4 |
| Solyc08g007510.2.1 | Tomato | extracellular, plasma membrane, vacuole | 31.69 | 55.4 |
| Os06t0136500-01 | Rice | golgi, plasma membrane, vacuole | 18.52 | 54.22 |
| TraesCS7D01G071100.1 | Wheat | endoplasmic reticulum | 29.22 | 52.99 |
| TraesCS4A01G373700.1 | Wheat | endoplasmic reticulum | 29.22 | 52.99 |
| EER87801 | Sorghum | endoplasmic reticulum | 29.22 | 52.59 |
| TraesCS7A01G075500.1 | Wheat | endoplasmic reticulum | 28.81 | 52.24 |
| CDY04395 | Canola | endoplasmic reticulum, extracellular | 27.98 | 50.37 |
| CDY47431 | Canola | endoplasmic reticulum, extracellular | 27.98 | 50.37 |
| GSMUA_Achr10P... | Banana | plasma membrane | 28.4 | 43.67 |
| CDY52620 | Canola | endoplasmic reticulum | 24.28 | 40.41 |
| CDY50566 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 23.87 | 39.73 |
| CDY08445 | Canola | endoplasmic reticulum | 22.63 | 37.67 |
| CDY42135 | Canola | endoplasmic reticulum | 22.22 | 36.99 |
Protein Annotations
| Gene3D:3.80.10.10 | MapMan:35.1 | GO:A0A078I8J7 | UniProt:A0A078I8J7 | EnsemblPlants:CDY45478 | ProteinID:CDY45478 |
| ProteinID:CDY45478.1 | InterPro:Cornichon | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016192 | EnsemblPlantsGene:GSBRNA2T00082116001 | InterPro:IPR032675 | InterPro:LRR_dom_sf | PFAM:PF03311 |
| PANTHER:PTHR12290 | PANTHER:PTHR12290:SF18 | SMART:SM01398 | SUPFAM:SSF52058 | TMHMM:TMhelix | UniParc:UPI0004EEA327 |
| SEG:seg | : | : | : | : | : |
Description
BnaC09g12960DBnaC09g12960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I8J7]
Coordinates
chrLK032626:-:191671..193902
Molecular Weight (calculated)
28149.5 Da
IEP (calculated)
8.199
GRAVY (calculated)
0.383
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDVWTWIIS FLILITLVGF IVYQLICLAD LEFDYINPYD SASRINFVVL PEFFLQGFLC FFYLVTGHWF MALLGVPYLY YNFQLYSKRQ HLVDVTEIFN
101: LLDWEKKKRL FKLAYMILTL FLTIFCFFIN NLVSLPFTRP GHIEILLAFK NKFPNFKCDF KKLPYSKQMT KSWTNKGAMS FDGVVFDSET SVVTELNLGG
201: ACLSGTLSAS SSLFRFHHLR YLDLLTTTLT PSHPSSNLAN SQT
101: LLDWEKKKRL FKLAYMILTL FLTIFCFFIN NLVSLPFTRP GHIEILLAFK NKFPNFKCDF KKLPYSKQMT KSWTNKGAMS FDGVVFDSET SVVTELNLGG
201: ACLSGTLSAS SSLFRFHHLR YLDLLTTTLT PSHPSSNLAN SQT
001: MRGVTETDKL ANGIFHLVCL ADLEFDYINP YDSASRINSV VLPEFIVQGV LCVFYLLTGH WFMTLLCLPY LYYNFHLYSK RQHLVDVTEI FNLLNWEKKK
101: RLFKLAYIVL NLFLTIFWMI YSALDDYED
101: RLFKLAYIVL NLFLTIFWMI YSALDDYED
Arabidopsis Description
Probable protein cornichon homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q3EDD7]
SUBAcon: [plasma membrane,plastid,extracellular]
SUBAcon: [plasma membrane,plastid,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.