CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 1
extracellular 5
golgi 4
plasma membrane 4
endoplasmic reticulum 6
vacuole 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX70995
CDX71796
CDX77067
CDX78905
CDX83252
CDX88803
CDX89063
CDX92368
CDX98596
CDX99411
CDY01565
CDY09128
CDY35676
CDY36586
CDY38543
CDY41153
CDY48196
CDY48365
CDY61373

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12390.1	CDY36586	AT1G15760.1	21798944
AT1G12390.1	CDY61373	AT1G15760.1	21798944
AT1G12390.1	CDX77067	AT2G27080.1	21798944
AT1G12390.1	CDX83252	AT2G27080.1	21798944
AT1G12390.1	CDY38543	AT2G27080.1	21798944
AT1G12390.1	CDY48196	AT2G27080.1	21798944
AT1G12390.1	CDX67837	AT3G60600.1	21798944
AT1G12390.1	CDX71796	AT3G60600.1	21798944
AT1G12390.1	CDX89063	AT3G60600.1	21798944
AT1G12390.1	CDY41153	AT3G60600.1	21798944
AT1G12390.1	CDY48365	AT3G60600.1	21798944
AT1G12390.1	CDX78905	AT4G19030.1	21798944
AT1G12390.1	CDX98596	AT4G19030.1	21798944
AT1G12390.1	CDX99411	AT4G19030.1	21798944
AT1G12390.1	CDY01565	AT4G19030.1	21798944
AT1G12390.1	CDX70995	AT5G22290.1	21798944
AT1G12390.1	CDX88803	AT5G22290.1	21798944
AT1G12390.1	CDX92368	AT5G22290.1	21798944
AT1G12390.1	CDY09128	AT5G22290.1	21798944
AT1G12390.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26562	Canola	endoplasmic reticulum, extracellular, vacuole	99.27	99.27
AT1G12390.1	Thale cress	endoplasmic reticulum, extracellular	95.62	95.62
CDX98068	Canola	endoplasmic reticulum, extracellular, vacuole	95.62	95.62
CDY21049	Canola	endoplasmic reticulum, extracellular, plasma membrane	95.62	95.62
CDY30076	Canola	endoplasmic reticulum, extracellular, vacuole	95.62	95.62
CDY31264	Canola	endoplasmic reticulum, extracellular, plasma membrane	95.62	95.62
CDY45964	Canola	endoplasmic reticulum, plasma membrane, vacuole	82.48	83.09
AT1G12340.1	Thale cress	extracellular, plasma membrane, plastid	77.37	82.17
CDY32198	Canola	plasma membrane	62.04	75.22
VIT_02s0025g05160.t01	Wine grape	endoplasmic reticulum, extracellular, plasma membrane	70.07	69.57
PGSC0003DMT400045318	Potato	endoplasmic reticulum, extracellular, vacuole	70.07	69.06
Solyc06g060550.2.1	Tomato	extracellular, plasma membrane, vacuole	68.61	67.63
KRH57311	Soybean	endoplasmic reticulum, extracellular, plasma membrane	64.96	64.96
KRH77425	Soybean	plasma membrane	62.77	64.66
KRH04043	Soybean	endoplasmic reticulum, plasma membrane, vacuole	63.5	63.5
KRH28013	Soybean	cytosol	50.37	62.73
GSMUA_Achr3P11390_001	Banana	plasma membrane	43.8	59.41
PGSC0003DMT400032506	Potato	endoplasmic reticulum, extracellular, vacuole	57.66	56.83
GSMUA_Achr9P00470_001	Banana	plasma membrane	55.47	56.72
Solyc08g007510.2.1	Tomato	extracellular, plasma membrane, vacuole	56.93	56.12
TraesCS7A01G075500.1	Wheat	endoplasmic reticulum	54.74	55.97
Os06t0136500-01	Rice	golgi, plasma membrane, vacuole	33.58	55.42
TraesCS7D01G071100.1	Wheat	endoplasmic reticulum	54.01	55.22
TraesCS4A01G373700.1	Wheat	endoplasmic reticulum	54.01	55.22
EER87801	Sorghum	endoplasmic reticulum	54.01	54.81
CDY04395	Canola	endoplasmic reticulum, extracellular	51.09	51.85
CDY47431	Canola	endoplasmic reticulum, extracellular	51.09	51.85
CDY45478	Canola	plasma membrane	78.83	44.44
GSMUA_Achr10P...	Banana	plasma membrane	51.09	44.3
CDY52620	Canola	endoplasmic reticulum	41.61	39.04
CDY08445	Canola	endoplasmic reticulum	41.61	39.04
CDY42135	Canola	endoplasmic reticulum	41.61	39.04
CDY50566	Canola	endoplasmic reticulum, extracellular, plasma membrane	40.15	37.67

Protein Annotations

MapMan:35.1	GO:A0A078FSA9	UniProt:A0A078FSA9	EnsemblPlants:CDY15996	ProteinID:CDY15996	ProteinID:CDY15996.1
InterPro:Cornichon	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0016192	EnsemblPlantsGene:GSBRNA2T00090382001	PFAM:PF03311	PANTHER:PTHR12290	PANTHER:PTHR12290:SF18	SMART:SM01398
TMHMM:TMhelix	UniParc:UPI0001B641A9	:	:	:	:

Description

BnaC08g41270DBnaC08g41270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FSA9]

Coordinates

chrLK032060:+:148408..149528

Molecular Weight (calculated)

16386.3 Da

IEP (calculated)

4.730

GRAVY (calculated)

0.701

Length

137 amino acids

Sequence
(BLAST)

001: MGDIWTWLIS FFFLIALVGI IVYQLVCLAD LEFDYINPYD SASRINSVVL PEFIVQGVLC VFYLITGHWF MAILCLPYLY YNFQLYSKRQ HLVDVTEIFN
101: LLNWEKKKRL FKLAYIILNL FLTIFWMIYS ALDDHED

Best Arabidopsis Sequence Match ( AT1G12390.1 )
(BLAST)

001: MGDIWTWLIS FFFLIALVGI IVYQLVCLAD LEFDYINPYD SASRINSVVL PEFIVQGVLC VFYLLTGHWF MTLLCLPYLY YNFHLYSKRQ HLVDVTEIFN
101: LLNWEKKKRL FKLAYIVLNL FLTIFWMIYS ALDDYED

Arabidopsis Description

Protein cornichon homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q84W04]
SUBAcon: [extracellular,endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.