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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, plastid, cytosol, plasma membrane

Predictor Summary:
  • nucleus 1
  • plastid 1
  • plasma membrane 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • cytosol 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane, plastid
Any Predictor:nucleus, peroxisome, plasma membrane, plastid
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:plasma membrane
PProwler:secretory
WoLF PSORT:cytosol
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY48196 Canola cytosol, peroxisome, plasma membrane 95.38 95.38
CDY38543 Canola cytosol, peroxisome, plasma membrane 82.31 83.59
AT2G27080.1 Thale cress cytosol, peroxisome, plasma membrane 83.08 83.08
CDX83252 Canola cytosol, peroxisome, plasma membrane 81.54 82.81
KRH14686 Soybean plastid 58.08 55.31
PGSC0003DMT400005086 Potato plastid 55.77 55.13
VIT_06s0009g01620.t01 Wine grape plasma membrane, plastid 55.38 53.93
KRH73453 Soybean plastid 56.15 53.48
PGSC0003DMT400022474 Potato plastid 54.62 52.59
Solyc01g009160.2.1 Tomato plastid 51.15 50.38
CDX70963 Canola cytosol 48.08 41.39
CDX88825 Canola cytosol 47.31 40.73
CDY09101 Canola cytosol 45.38 40.27
GSMUA_Achr3P03620_001 Banana cytosol, peroxisome, vacuole 40.38 39.77
GSMUA_Achr11P... Banana cytosol, peroxisome, vacuole 40.77 39.55
CDY09100 Canola cytosol 44.62 38.28
OQU87732 Sorghum cytosol 41.15 36.27
Os12t0127200-01 Rice extracellular, plasma membrane, vacuole 37.31 35.27
Os11t0130400-01 Rice extracellular, peroxisome, vacuole 37.31 35.14
TraesCS3A01G336800.1 Wheat cytosol 38.85 34.47
TraesCS2A01G489300.1 Wheat cytosol, extracellular, plasma membrane 34.62 33.96
TraesCS4D01G124700.1 Wheat cytosol, extracellular, plasma membrane 35.77 33.94
TraesCSU01G059700.1 Wheat cytosol, extracellular, plasma membrane 35.38 33.82
TraesCSU01G191800.1 Wheat cytosol, extracellular, plasma membrane 35.38 33.82
Zm00001d005010_P001 Maize plastid 36.92 33.8
TraesCS2A01G489400.1 Wheat cytosol, extracellular, plasma membrane 34.62 33.71
TraesCS3D01G329800.1 Wheat cytosol 39.62 33.55
Zm00001d043128_P001 Maize cytosol 37.69 33.11
TraesCS5D01G151200.1 Wheat cytosol, extracellular, plasma membrane 36.15 32.98
TraesCS4B01G128000.1 Wheat cytosol, extracellular, plasma membrane 34.62 32.85
TraesCS5A01G141200.1 Wheat cytosol, extracellular, peroxisome 35.77 32.75
CDY72163 Canola plastid 30.38 31.85
TraesCS1B01G251100.1 Wheat endoplasmic reticulum, plasma membrane, plastid 30.38 31.47
CDY16419 Canola plastid 30.0 31.45
TraesCS5B01G139500.1 Wheat cytosol, extracellular, peroxisome 34.23 31.45
EES15581 Sorghum cytosol, mitochondrion, peroxisome 36.15 30.82
HORVU4Hr1G026770.2 Barley cytosol, plasma membrane 35.38 30.46
HORVU0Hr1G010640.1 Barley cytosol, peroxisome 35.77 30.39
TraesCS3B01G367900.1 Wheat cytosol, endoplasmic reticulum, peroxisome, plastid 38.46 30.3
CDX74604 Canola cytosol, nucleus, plasma membrane 29.62 30.2
CDY53530 Canola cytosol, nucleus, plasma membrane 29.62 30.2
Os01t0812100-01 Rice cytosol, mitochondrion, peroxisome 40.0 29.97
HORVU3Hr1G079540.2 Barley plastid 40.38 26.65
HORVU5Hr1G058740.3 Barley cytosol, plastid 17.31 26.63
EES09185 Sorghum plastid 39.62 26.01
CDY26995 Canola cytosol 28.85 24.43
Zm00001d028765_P001 Maize plastid 25.38 21.15
HORVU6Hr1G013910.1 Barley mitochondrion 30.38 21.07
CDY38564 Canola plasma membrane 29.62 12.15
Protein Annotations
EnsemblPlants:CDX77067EnsemblPlantsGene:GSBRNA2T00127643001GO:A0A078CK28InterPro:LEA_2PANTHER:PTHR31852PANTHER:PTHR31852:SF0
PFAM:PF03168ProteinID:CDX77067ProteinID:CDX77067.1SEG:segTMHMM:TMhelixUniParc:UPI000189D74F
MapMan:35.1:::::
Description
BnaC04g38620D
Coordinates
chrLK031809:+:889412..890357
Molecular Weight (calculated)
28662.9 Da
IEP (calculated)
10.487
GRAVY (calculated)
-0.136
Length
260 amino acids
Sequence
(BLAST)
001: MAERVHPADS PPQSGQFSGN FSSGEFPRKP APPPATYVIQ VPKDQIYRVP PPENAHRLQL LSRKKPNRSR CRCCFCYFLA AIVILVVLAG ISFAVLYVVF
101: RPEAPKYSVE GFSVSGINLT SPSPISPRFN VTVRSRNGNG KLGIYYEKGS SVDVFYGDVA LCNGALPVFY QPANNVTLVK TALTGSRIQL TSGARKEMRN
201: ELSKKTMPFK LKIKAPVKIK VGSVKTWTVT VKVNCDVTVD KLTAPSRIVS RKCSHDVDLW
Best Arabidopsis Sequence Match ( AT2G27080.1 )
(BLAST)
001: MAERVYPADS PPQSGQFSGN FSSGEFPKKP APPPSTYVIQ VPKDQIYRIP PPENAHRFEQ LSRKKTNRSN CRCCFCSFLA AVFILIVLAG ISFAVLYLIY
101: RPEAPKYSIE GFSVSGINLN STSPISPSFN VTVRSRNGNG KIGVYYEKES SVDVYYNDVD ISNGVMPVFY QPAKNVTVVK LVLSGSKIQL TSGMRKEMRN
201: EVSKKTVPFK LKIKAPVKIK FGSVKTWTMI VNVDCDVTVD KLTAPSRIVS RKCSHDVDLW
Arabidopsis Description
NHL13NDR1/HIN1-like protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD2]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.