Factsheet for TraesCS3A01G336800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G329800.1	Wheat	cytosol	90.44	86.32
TraesCS3B01G367900.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	90.78	80.61
TraesCS1B01G251100.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	64.85	75.7
HORVU5Hr1G058740.3	Barley	cytosol, plastid	40.27	69.82
HORVU3Hr1G079540.2	Barley	plastid	93.17	69.29
OQU87732	Sorghum	cytosol	69.28	68.81
Zm00001d043128_P001	Maize	cytosol	65.19	64.53
Os01t0812100-01	Rice	cytosol, mitochondrion, peroxisome	71.67	60.52
HORVU6Hr1G013910.1	Barley	mitochondrion	69.97	54.67
TraesCS5A01G141200.1	Wheat	cytosol, extracellular, peroxisome	45.39	46.83
TraesCS2A01G489300.1	Wheat	cytosol, extracellular, plasma membrane	41.64	46.04
TraesCS2A01G489400.1	Wheat	cytosol, extracellular, plasma membrane	40.96	44.94
GSMUA_Achr11P...	Banana	cytosol, peroxisome, vacuole	39.93	43.66
Zm00001d028765_P001	Maize	plastid	44.71	41.99
KRH73453	Soybean	plastid	38.91	41.76
KRH14686	Soybean	plastid	37.88	40.66
CDY48196	Canola	cytosol, peroxisome, plasma membrane	35.84	40.38
Bra034321.1-P	Field mustard	cytosol, peroxisome, plasma membrane	35.84	40.38
GSMUA_Achr3P03620_001	Banana	cytosol, peroxisome, vacuole	36.18	40.15
CDX77067	Canola	cytosol, peroxisome, plasma membrane, plastid	34.47	38.85
Bra000526.1-P	Field mustard	cytosol, peroxisome, plasma membrane	33.45	38.28
CDY38543	Canola	cytosol, peroxisome, plasma membrane	33.45	38.28
CDX83252	Canola	cytosol, peroxisome, plasma membrane	32.76	37.5
PGSC0003DMT400022474	Potato	plastid	34.13	37.04
AT2G27080.1	Thale cress	cytosol, peroxisome, plasma membrane	32.76	36.92
VIT_06s0009g01620.t01	Wine grape	plasma membrane, plastid	33.45	36.7
PGSC0003DMT400005086	Potato	plastid	32.76	36.5
Solyc01g009160.2.1	Tomato	plastid	32.76	36.36
TraesCS1A01G167100.1	Wheat	cytosol, nucleus, peroxisome	27.65	32.02
AT5G21130.1	Thale cress	cytosol	30.38	31.67
TraesCS5A01G171200.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	22.53	31.58
CDY09100	Canola	cytosol	31.74	30.69
CDY09101	Canola	cytosol	30.38	30.38
Bra020147.1-P	Field mustard	cytosol	31.4	30.36
TraesCS4A01G216800.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	22.53	29.86
CDX70963	Canola	cytosol	30.72	29.8
Bra006594.1-P	Field mustard	nucleus	30.72	29.8
CDX88825	Canola	cytosol	30.72	29.8
Bra020148.1-P	Field mustard	cytosol	29.69	29.69
TraesCS4A01G217000.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	22.53	29.2
TraesCS2A01G593300.1	Wheat	peroxisome	23.21	26.88

Protein Annotations

EnsemblPlants:TraesCS3A01G336800.1	EnsemblPlantsGene:TraesCS3A01G336800	InterPro:LEA_2	PANTHER:PTHR31852	PANTHER:PTHR31852:SF0	PFAM:PF03168
SEG:seg	TMHMM:TMhelix	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr3A:+:583748193..583749074

Molecular Weight (calculated)

31254.5 Da

IEP (calculated)

10.316

GRAVY (calculated)

0.053

Length

293 amino acids

Sequence
(BLAST)

001: MSDGRVHPAA TSSDFSGEYA YSSSDPSSSP LYSFHFEKPI PPPPPHPQKP PGPLPGTYVV QVPKDKVFRV PPPENARLFQ HYTRRAKRRA GCSYLRACLY
101: AVIIVLSLAV LLAAAVGAVY LAFKPRQPAY SVVSLAVSGL AGVGNASAPS ALSPGFAATV RADNSANAKV GVHYDGAGSR VAVSYEGVRL ADGAWPAFYQ
201: APGNVTVFVA RAKGAGIRFA ERERGQMAAA ERLWSVPFDV DITVPVRLQL GGVRTWAVPV TVRCAMAVDR LAASAKVVSR SCDVKVPFLF WRN

Best Arabidopsis Sequence Match ( AT2G27080.1 )
(BLAST)

001: MAERVYPADS PPQSGQFSGN FSSGEFPKKP APPPSTYVIQ VPKDQIYRIP PPENAHRFEQ LSRKKTNRSN CRCCFCSFLA AVFILIVLAG ISFAVLYLIY
101: RPEAPKYSIE GFSVSGINLN STSPISPSFN VTVRSRNGNG KIGVYYEKES SVDVYYNDVD ISNGVMPVFY QPAKNVTVVK LVLSGSKIQL TSGMRKEMRN
201: EVSKKTVPFK LKIKAPVKIK FGSVKTWTMI VNVDCDVTVD KLTAPSRIVS RKCSHDVDLW

Arabidopsis Description

NHL13NDR1/HIN1-like protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD2]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.