Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88825 | Canola | cytosol | 92.72 | 92.72 |
| CDY09101 | Canola | cytosol | 65.23 | 67.24 |
| CDY09100 | Canola | cytosol | 64.9 | 64.69 |
| AT5G21130.1 | Thale cress | cytosol | 55.96 | 60.14 |
| CDX77067 | Canola | cytosol, peroxisome, plasma membrane, plastid | 41.39 | 48.08 |
| CDY48196 | Canola | cytosol, peroxisome, plasma membrane | 41.06 | 47.69 |
| CDY38543 | Canola | cytosol, peroxisome, plasma membrane | 37.42 | 44.14 |
| CDX83252 | Canola | cytosol, peroxisome, plasma membrane | 36.76 | 43.36 |
| PGSC0003DMT400005086 | Potato | plastid | 36.76 | 42.21 |
| PGSC0003DMT400022474 | Potato | plastid | 36.09 | 40.37 |
| Solyc01g009160.2.1 | Tomato | plastid | 35.1 | 40.15 |
| KRH73453 | Soybean | plastid | 34.11 | 37.73 |
| KRH14686 | Soybean | plastid | 33.77 | 37.36 |
| VIT_06s0009g01620.t01 | Wine grape | plasma membrane, plastid | 32.78 | 37.08 |
| Os12t0127200-01 | Rice | extracellular, plasma membrane, vacuole | 31.79 | 34.91 |
| GSMUA_Achr3P03620_001 | Banana | cytosol, peroxisome, vacuole | 29.8 | 34.09 |
| Os11t0130400-01 | Rice | extracellular, peroxisome, vacuole | 30.79 | 33.7 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, vacuole | 29.8 | 33.58 |
| TraesCSU01G059700.1 | Wheat | cytosol, extracellular, plasma membrane | 29.8 | 33.09 |
| TraesCSU01G191800.1 | Wheat | cytosol, extracellular, plasma membrane | 29.8 | 33.09 |
| TraesCS4D01G124700.1 | Wheat | cytosol, extracellular, plasma membrane | 29.8 | 32.85 |
| TraesCS2A01G489300.1 | Wheat | cytosol, extracellular, plasma membrane | 28.48 | 32.45 |
| TraesCS2A01G489400.1 | Wheat | cytosol, extracellular, plasma membrane | 28.48 | 32.21 |
| OQU87732 | Sorghum | cytosol | 31.13 | 31.86 |
| TraesCS4B01G128000.1 | Wheat | cytosol, extracellular, plasma membrane | 28.81 | 31.75 |
| TraesCS5D01G151200.1 | Wheat | cytosol, extracellular, plasma membrane | 29.47 | 31.23 |
| TraesCS5A01G141200.1 | Wheat | cytosol, extracellular, peroxisome | 29.14 | 30.99 |
| TraesCS3A01G336800.1 | Wheat | cytosol | 29.8 | 30.72 |
| Zm00001d005010_P001 | Maize | plastid | 28.81 | 30.63 |
| TraesCS5B01G139500.1 | Wheat | cytosol, extracellular, peroxisome | 28.48 | 30.39 |
| EES15581 | Sorghum | cytosol, mitochondrion, peroxisome | 30.13 | 29.84 |
| HORVU4Hr1G026770.2 | Barley | cytosol, plasma membrane | 29.8 | 29.8 |
| Zm00001d043128_P001 | Maize | cytosol | 29.14 | 29.73 |
| TraesCS3D01G329800.1 | Wheat | cytosol | 30.13 | 29.64 |
| TraesCS1B01G251100.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 23.84 | 28.69 |
| HORVU0Hr1G010640.1 | Barley | cytosol, peroxisome | 28.48 | 28.1 |
| TraesCS3B01G367900.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome, plastid | 29.8 | 27.27 |
| CDY72163 | Canola | plastid | 21.85 | 26.61 |
| CDY16419 | Canola | plastid | 21.52 | 26.21 |
| Os01t0812100-01 | Rice | cytosol, mitochondrion, peroxisome | 29.47 | 25.65 |
| HORVU5Hr1G058740.3 | Barley | cytosol, plastid | 14.24 | 25.44 |
| CDY53530 | Canola | cytosol, nucleus, plasma membrane | 20.53 | 24.31 |
| CDX74604 | Canola | cytosol, nucleus, plasma membrane | 20.53 | 24.31 |
| HORVU3Hr1G079540.2 | Barley | plastid | 31.46 | 24.11 |
| EES09185 | Sorghum | plastid | 29.8 | 22.73 |
| HORVU6Hr1G013910.1 | Barley | mitochondrion | 26.49 | 21.33 |
| Zm00001d028765_P001 | Maize | plastid | 21.19 | 20.51 |
| CDY26995 | Canola | cytosol | 19.54 | 19.22 |
| CDY38564 | Canola | plasma membrane | 20.53 | 9.78 |
Protein Annotations
| EnsemblPlants:CDX70963 | EnsemblPlantsGene:GSBRNA2T00140883001 | GO:A0A078C7D8 | PANTHER:PTHR31852 | PANTHER:PTHR31852:SF0 | ProteinID:CDX70963 |
| ProteinID:CDX70963.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EDFE47 | MapMan:35.1 | : |
Description
BnaC03g10470D
Coordinates
chrLK031791:+:2951123..2952031
Molecular Weight (calculated)
33568.6 Da
IEP (calculated)
10.419
GRAVY (calculated)
-0.328
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MADNNIQPWP RNKNIRPSVD SNDTIQRSPR SSGGFTTDKD IGSRRPPRHH QSVDSVDSTS SLYSIDSRRS KPPPPGTYHV QLPKEQIYRV PPPENAHRYE
101: YLSRQKHNRS ACRRCCCYSL ATLLVLLLLA GLVVGVFLLV CRPHKPRFSV SGVSVAVVNL ASQSPISPVF KIKVRCKNVN GKLGLVYEKG SAVEIFHEGI
201: KLGDGEFAAF EQPAENVTVT VTKLRGSRIQ LKSLSRKELK DSEKTGKVRF DLRVKAPIRF RVGVVTTWTM GVTVDCKITV NKLTSSATVI TEDCVTQDIS
301: LL
101: YLSRQKHNRS ACRRCCCYSL ATLLVLLLLA GLVVGVFLLV CRPHKPRFSV SGVSVAVVNL ASQSPISPVF KIKVRCKNVN GKLGLVYEKG SAVEIFHEGI
201: KLGDGEFAAF EQPAENVTVT VTKLRGSRIQ LKSLSRKELK DSEKTGKVRF DLRVKAPIRF RVGVVTTWTM GVTVDCKITV NKLTSSATVI TEDCVTQDIS
301: LL
001: MTVEKPQEMT GDTNSDGFLT NKDVHRIKHP SLDTNDSSSS RYSVDSQKSR IGPPPGTYVI KLPKDQIYRV PPPENAHRYE YLSRRKTNKS CCRRCLCYSL
101: SALLIIIVLA AIAFGFFYLV YQPHKPQFSV SGVSVTGINL TSSSPFSPVI RIKLRSQNVK GKLGLIYEKG NEADVFFNGT KLGNGEFTAF KQPAGNVTVI
201: VTVLKGSSVK LKSSSRKELT ESQKKGKVPF GLRIKAPVKF KVGSVTTWTM TITVDCKITV DKLTASATVK TENCETGLSL L
101: SALLIIIVLA AIAFGFFYLV YQPHKPQFSV SGVSVTGINL TSSSPFSPVI RIKLRSQNVK GKLGLIYEKG NEADVFFNGT KLGNGEFTAF KQPAGNVTVI
201: VTVLKGSSVK LKSSSRKELT ESQKKGKVPF GLRIKAPVKF KVGSVTTWTM TITVDCKITV DKLTASATVK TENCETGLSL L
Arabidopsis Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Source:UniProtKB/TrEMBL;Acc:Q84VP8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.