CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G36970.1	Thale cress	nucleus, peroxisome, plasma membrane	69.71	86.29
CDY53530	Canola	cytosol, nucleus, plasma membrane	71.66	86.27
CDX74604	Canola	cytosol, nucleus, plasma membrane	71.34	85.88
CDY16419	Canola	plastid	56.68	70.16
CDY72163	Canola	plastid	56.68	70.16
VIT_04s0069g01010.t01	Wine grape	plasma membrane	46.91	57.37
PGSC0003DMT400055257	Potato	plasma membrane, plastid	46.91	55.6
KRH72891	Soybean	nucleus, peroxisome, plasma membrane	45.93	55.29
Solyc02g036480.1.1	Tomato	nucleus	45.93	55.08
KRH17244	Soybean	cytosol, peroxisome, plasma membrane	46.58	55.0
GSMUA_Achr5P11970_001	Banana	cytosol, peroxisome, plasma membrane	42.02	52.44
KRG98056	Soybean	cytosol, peroxisome, plasma membrane	40.39	50.82
KRH30725	Soybean	cytosol, nucleus, plasma membrane	40.72	50.81
GSMUA_Achr9P20600_001	Banana	nucleus, peroxisome, plasma membrane	37.46	47.92
PGSC0003DMT400050761	Potato	cytosol, plasma membrane, vacuole	40.07	47.31
GSMUA_Achr3P14210_001	Banana	plasma membrane	36.16	45.87
TraesCS1A01G167100.1	Wheat	cytosol, nucleus, peroxisome	37.78	45.85
HORVU1Hr1G044080.1	Barley	cytosol, endoplasmic reticulum, peroxisome	38.11	45.0
TraesCS1B01G183500.1	Wheat	cytosol, nucleus, plasma membrane	38.44	44.36
TraesCS1D01G173800.1	Wheat	cytosol, nucleus, plasma membrane	38.44	44.36
GSMUA_Achr1P17720_001	Banana	plasma membrane	36.16	40.81
KXG38271	Sorghum	cytosol, nucleus, vacuole	36.16	40.22
Zm00001d032620_P001	Maize	cytosol	34.85	39.05
EES13101	Sorghum	cytosol	31.27	38.87
Zm00001d013947_P001	Maize	cytosol	33.22	38.49
TraesCS2D01G561400.1	Wheat	peroxisome	31.27	37.94
TraesCS2A01G593300.1	Wheat	peroxisome	31.27	37.94
Solyc02g081450.2.1	Tomato	cytosol, plasma membrane, vacuole	40.07	37.73
HORVU2Hr1G119500.1	Barley	peroxisome	30.94	37.7
Os04t0677300-01	Rice	plastid	31.27	37.65
Zm00001d001832_P001	Maize	plastid	30.62	37.45
TraesCS2B01G591000.1	Wheat	peroxisome	30.94	37.4
OQU85155	Sorghum	extracellular, plasma membrane	23.78	37.24
CDY38564	Canola	plasma membrane	76.22	36.91
TraesCS4A01G217000.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	24.1	32.74
TraesCS4A01G216800.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	23.45	32.58
OQU90204	Sorghum	mitochondrion, plastid	23.13	32.57
TraesCS4D01G092200.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	23.78	32.44
TraesCS4B01G095400.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	24.43	32.33
TraesCS4D01G091900.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	23.78	32.3
TraesCS4B01G095300.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	23.45	31.86
HORVU4Hr1G018760.1	Barley	cytosol, endoplasmic reticulum, peroxisome	24.1	31.62
EES06862	Sorghum	peroxisome	23.13	30.08
Os02t0507900-00	Rice	cytosol	24.1	29.6
CDY38543	Canola	cytosol, peroxisome, plasma membrane	24.1	28.91
CDY48196	Canola	cytosol, peroxisome, plasma membrane	24.43	28.85
CDX77067	Canola	cytosol, peroxisome, plasma membrane, plastid	24.43	28.85
CDX83252	Canola	cytosol, peroxisome, plasma membrane	23.78	28.52
HORVU4Hr1G018720.1	Barley	cytosol	12.38	24.36
CDY09101	Canola	cytosol	20.52	21.5
OQU88420	Sorghum	mitochondrion	24.43	21.49
CDY09100	Canola	cytosol	20.52	20.79
CDX88825	Canola	cytosol	19.87	20.2
CDX70963	Canola	cytosol	19.22	19.54

Protein Annotations

EnsemblPlants:CDY26995	EnsemblPlantsGene:GSBRNA2T00036779001	GO:A0A078GKA8	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:LEA_2	PANTHER:PTHR31852	PANTHER:PTHR31852:SF1	PFAM:PF03168	ProteinID:CDY26995	ProteinID:CDY26995.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EDC1EB	UniProt:A0A078GKA8	MapMan:35.1	:

Description

BnaC06g12110DBnaC06g12110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GKA8]

Coordinates

chrLK032198:-:170312..175137

Molecular Weight (calculated)

34738.4 Da

IEP (calculated)

10.155

GRAVY (calculated)

-0.218

Length

307 amino acids

Sequence
(BLAST)

001: MLDDGRADQD RISFTKLKRD TSSVPRIKAR RCFKVETVCD FNEEKGLLSA SGYHHSPLPL WKIHPVSDPE ALPPAHPTAP LVPRGSSRSE HGDPTKESVT
101: QPPLLDTPRR KKRGSCCCRC VCYTLLVIFL LIVIVGAAVG ILYLVFRPKL PDYNIDRLLL TRFTFNQDSS LSTAFNVTIT AKNPNEKIGI YYEDGSRISV
201: LYMQTRLSNG SLPKFYQGHE NTTIIFVEMT GYTRNATSLM ATLQEQQRLT ESIPLRIRVT QPVRIKLGKL KLMEVKFMVR CSVSVDSLAA NNVIRVRSSN
301: CKFRFRL

Best Arabidopsis Sequence Match ( AT5G36970.1 )
(BLAST)

001: MSDHQKIHPV SDPEAPPHPT APLVPRGSSR SEHGDPTKTQ QAAPLDPPRE KKGSRSCWCR CVCYTLLVLF LLIVIVGAIV GILYLVFRPK FPDYNIDRLQ
101: LTRFQLNQDL SLSTAFNVTI TAKNPNEKIG IYYEDGSKIS VLYMQTRISN GSLPKFYQGH ENTTIILVEM TGFTQNATSL MTTLQEQQRL TGSIPLRIRV
201: TQPVRIKLGK LKLMKVRFLV RCGVSVDSLA ANSVIRVRSS NCKYRFRL

Arabidopsis Description

NHL25NHL25 [Source:UniProtKB/TrEMBL;Acc:A0A178UFH9]
SUBAcon: [peroxisome,nucleus,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.