Factsheet for PGSC0003DMT400055257

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

nucleus 3
plastid 3
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus, plasma membrane
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g036480.1.1	Tomato	nucleus	93.05	94.14
PGSC0003DMT400050761	Potato	cytosol, plasma membrane, vacuole	64.86	64.62
VIT_04s0069g01010.t01	Wine grape	plasma membrane	57.92	59.76
AT5G36970.1	Thale cress	nucleus, peroxisome, plasma membrane	54.83	57.26
KRH72891	Soybean	nucleus, peroxisome, plasma membrane	54.44	55.29
KRH17244	Soybean	cytosol, peroxisome, plasma membrane	54.44	54.23
Bra028103.1-P	Field mustard	cytosol, nucleus, plasma membrane	53.28	54.12
CDY53530	Canola	cytosol, nucleus, plasma membrane	53.28	54.12
KRG98056	Soybean	cytosol, peroxisome, plasma membrane	50.58	53.69
CDX74604	Canola	cytosol, nucleus, plasma membrane	52.51	53.33
KRH30725	Soybean	cytosol, nucleus, plasma membrane	50.58	53.25
CDY72163	Canola	plastid	50.97	53.23
PGSC0003DMT400039340	Potato	plastid	52.9	53.1
CDY16419	Canola	plastid	50.58	52.82
AT1G65690.1	Thale cress	plasma membrane, plastid	51.35	52.78
Bra039737.1-P	Field mustard	plasma membrane, plastid	50.19	52.42
GSMUA_Achr5P11970_001	Banana	cytosol, peroxisome, plasma membrane	49.03	51.63
GSMUA_Achr9P20600_001	Banana	nucleus, peroxisome, plasma membrane	44.4	47.92
CDY26995	Canola	cytosol	55.6	46.91
GSMUA_Achr3P14210_001	Banana	plasma membrane	43.63	46.69
TraesCS1A01G167100.1	Wheat	cytosol, nucleus, peroxisome	44.02	45.06
TraesCS1D01G173800.1	Wheat	cytosol, nucleus, plasma membrane	45.95	44.74
HORVU1Hr1G044080.1	Barley	cytosol, endoplasmic reticulum, peroxisome	44.79	44.62
TraesCS1B01G183500.1	Wheat	cytosol, nucleus, plasma membrane	45.56	44.36
KXG38271	Sorghum	cytosol, nucleus, vacuole	42.47	39.86
GSMUA_Achr1P17720_001	Banana	plasma membrane	41.7	39.71
OQU85155	Sorghum	extracellular, plasma membrane	29.73	39.29
Zm00001d013947_P001	Maize	cytosol	40.15	39.25
Zm00001d032620_P001	Maize	cytosol	41.31	39.05
EES13101	Sorghum	cytosol	34.75	36.44
Os04t0677300-01	Rice	plastid	35.52	36.08
HORVU2Hr1G119500.1	Barley	peroxisome	33.98	34.92
TraesCS2D01G561400.1	Wheat	peroxisome	33.98	34.78
Zm00001d001832_P001	Maize	plastid	33.2	34.26
TraesCS2A01G593300.1	Wheat	peroxisome	33.2	33.99
PGSC0003DMT400047270	Potato	cytosol	28.19	33.95
OQU90204	Sorghum	mitochondrion, plastid	28.57	33.95
TraesCS2B01G591000.1	Wheat	peroxisome	33.2	33.86
TraesCS4A01G217000.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	28.96	33.19
TraesCS4A01G216800.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	27.03	31.67
PGSC0003DMT400005086	Potato	plastid	32.05	31.56
TraesCS4D01G092200.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	27.41	31.56
TraesCS4B01G095400.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	28.19	31.47
TraesCS4D01G091900.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	27.41	31.42
HORVU4Hr1G018760.1	Barley	cytosol, endoplasmic reticulum, peroxisome	27.8	30.77
TraesCS4B01G095300.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	26.64	30.53
PGSC0003DMT400022474	Potato	plastid	31.66	30.37
Os02t0507900-00	Rice	cytosol	28.96	30.0
PGSC0003DMT400047271	Potato	cytosol, golgi, plasma membrane	25.87	29.91
EES06862	Sorghum	peroxisome	26.64	29.24
CDY38564	Canola	plasma membrane	55.21	22.56
OQU88420	Sorghum	mitochondrion	29.73	22.06
HORVU4Hr1G018720.1	Barley	cytosol	13.13	21.79

Protein Annotations

EnsemblPlants:PGSC0003DMT400055257	EnsemblPlantsGene:PGSC0003DMG400021454	EntrezGene:102600044	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:LEA_2	PANTHER:PTHR31852	PANTHER:PTHR31852:SF48	PFAM:PF03168	PGSC:PGSC0003DMG400021454	RefSeq:XP_006350456.1
SEG:seg	SUPFAM:SSF117070	TMHMM:TMhelix	UniParc:UPI0002958F5E	UniProt:M1BXN8	MapMan:35.1

Description

NHL25 (NDR1/HIN1-LIKE 25) [Source:PGSC_GENE;Acc:PGSC0003DMG400021454]

Coordinates

chr2:-:17939341..17940416

Molecular Weight (calculated)

29399.3 Da

IEP (calculated)

10.676

GRAVY (calculated)

-0.344

Length

259 amino acids

Sequence
(BLAST)

001: MADQQKIHPV SVPEPVQVAP LPKPTAPLVP RGSSRSENGD PERQQPPPPL KRSLTPYSPL KPPKKKRGCC VRCLCWSCCL FFLLIVLIGI AAAVVYLVFQ
101: PKLPKYSVDS MRITQFNLNT DTSLSATFNV NITARNPNKR IGIYYENGSH LSVWYKGTNL CEGKLPKFYQ GHRNTTQLNV HLTGQTQNAT NLLQLLQEDQ
201: QKGKIPLNIR VKVPVRIKLG KLKLMKWKFL LKCSLNVDNL SPDNVIRIRD NKCKVRFRF

Best Arabidopsis Sequence Match ( AT5G36970.1 )
(BLAST)

001: MSDHQKIHPV SDPEAPPHPT APLVPRGSSR SEHGDPTKTQ QAAPLDPPRE KKGSRSCWCR CVCYTLLVLF LLIVIVGAIV GILYLVFRPK FPDYNIDRLQ
101: LTRFQLNQDL SLSTAFNVTI TAKNPNEKIG IYYEDGSKIS VLYMQTRISN GSLPKFYQGH ENTTIILVEM TGFTQNATSL MTTLQEQQRL TGSIPLRIRV
201: TQPVRIKLGK LKLMKVRFLV RCGVSVDSLA ANSVIRVRSS NCKYRFRL

Arabidopsis Description

NHL25NHL25 [Source:UniProtKB/TrEMBL;Acc:A0A178UFH9]
SUBAcon: [peroxisome,nucleus,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.