Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72163 | Canola | plastid | 81.75 | 83.06 |
| Bra039737.1-P | Field mustard | plasma membrane, plastid | 79.76 | 81.05 |
| CDY16419 | Canola | plastid | 79.76 | 81.05 |
| AT5G36970.1 | Thale cress | nucleus, peroxisome, plasma membrane | 72.22 | 73.39 |
| VIT_04s0069g01010.t01 | Wine grape | plasma membrane | 58.33 | 58.57 |
| KRH30725 | Soybean | cytosol, nucleus, plasma membrane | 55.16 | 56.5 |
| KRG98056 | Soybean | cytosol, peroxisome, plasma membrane | 54.37 | 56.15 |
| KRH72891 | Soybean | nucleus, peroxisome, plasma membrane | 56.75 | 56.08 |
| KRH17244 | Soybean | cytosol, peroxisome, plasma membrane | 57.54 | 55.77 |
| GSMUA_Achr5P11970_001 | Banana | cytosol, peroxisome, plasma membrane | 52.38 | 53.66 |
| PGSC0003DMT400055257 | Potato | plasma membrane, plastid | 52.78 | 51.35 |
| Solyc02g036480.1.1 | Tomato | nucleus | 51.19 | 50.39 |
| PGSC0003DMT400050761 | Potato | cytosol, plasma membrane, vacuole | 50.4 | 48.85 |
| TraesCS1A01G167100.1 | Wheat | cytosol, nucleus, peroxisome | 48.41 | 48.22 |
| GSMUA_Achr3P14210_001 | Banana | plasma membrane | 45.63 | 47.52 |
| HORVU1Hr1G044080.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 48.81 | 47.31 |
| TraesCS1B01G183500.1 | Wheat | cytosol, nucleus, plasma membrane | 49.6 | 46.99 |
| TraesCS1D01G173800.1 | Wheat | cytosol, nucleus, plasma membrane | 49.21 | 46.62 |
| GSMUA_Achr9P20600_001 | Banana | nucleus, peroxisome, plasma membrane | 44.05 | 46.25 |
| AT1G54540.1 | Thale cress | cytosol, peroxisome, plasma membrane, plastid | 39.68 | 41.84 |
| KXG38271 | Sorghum | cytosol, nucleus, vacuole | 45.63 | 41.67 |
| Zm00001d032620_P001 | Maize | cytosol | 44.44 | 40.88 |
| Zm00001d013947_P001 | Maize | cytosol | 42.46 | 40.38 |
| GSMUA_Achr1P17720_001 | Banana | plasma membrane | 42.46 | 39.34 |
| EES13101 | Sorghum | cytosol | 38.49 | 39.27 |
| OQU85155 | Sorghum | extracellular, plasma membrane | 30.16 | 38.78 |
| Os04t0677300-01 | Rice | plastid | 38.89 | 38.43 |
| Solyc02g081450.2.1 | Tomato | cytosol, plasma membrane, vacuole | 49.21 | 38.04 |
| TraesCS2A01G593300.1 | Wheat | peroxisome | 37.3 | 37.15 |
| Zm00001d001832_P001 | Maize | plastid | 36.9 | 37.05 |
| HORVU2Hr1G119500.1 | Barley | peroxisome | 36.9 | 36.9 |
| TraesCS2D01G561400.1 | Wheat | peroxisome | 36.51 | 36.36 |
| TraesCS2B01G591000.1 | Wheat | peroxisome | 36.51 | 36.22 |
| TraesCS4A01G217000.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome, plastid | 31.75 | 35.4 |
| TraesCS4D01G091900.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 30.95 | 34.51 |
| TraesCS4A01G216800.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 30.16 | 34.39 |
| TraesCS4B01G095400.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 31.35 | 34.05 |
| OQU90204 | Sorghum | mitochondrion, plastid | 28.97 | 33.49 |
| TraesCS4D01G092200.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 29.76 | 33.33 |
| HORVU4Hr1G018760.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 30.95 | 33.33 |
| TraesCS4B01G095300.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 29.76 | 33.19 |
| EES06862 | Sorghum | peroxisome | 28.97 | 30.93 |
| AT2G27080.1 | Thale cress | cytosol, peroxisome, plasma membrane | 31.35 | 30.38 |
| Os02t0507900-00 | Rice | cytosol | 28.97 | 29.2 |
| HORVU4Hr1G018720.1 | Barley | cytosol | 15.08 | 24.36 |
| AT5G21130.1 | Thale cress | cytosol | 24.6 | 22.06 |
| OQU88420 | Sorghum | mitochondrion | 30.56 | 22.06 |
Protein Annotations
| MapMan:35.1 | EntrezGene:842880 | UniProt:A0A178WH82 | ProteinID:AAF23842.1 | ProteinID:AEE34412.1 | ArrayExpress:AT1G65690 |
| EnsemblPlantsGene:AT1G65690 | RefSeq:AT1G65690 | TAIR:AT1G65690 | RefSeq:AT1G65690-TAIR-G | EnsemblPlants:AT1G65690.1 | TAIR:AT1G65690.1 |
| EMBL:AY086125 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0005886 | GO:GO:0006629 | GO:GO:0006950 | GO:GO:0006970 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009737 |
| GO:GO:0009738 | GO:GO:0009987 | GO:GO:0010116 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019748 |
| GO:GO:1902074 | InterPro:LEA_2 | RefSeq:NP_564862.1 | ProteinID:OAP17707.1 | PFAM:PF03168 | PO:PO:0000013 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001185 | PO:PO:0007098 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009015 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31852 | PANTHER:PTHR31852:SF1 |
| UniProt:Q8LD98 | TMHMM:TMhelix | UniParc:UPI00000A1F4F | SEG:seg | : | : |
Description
NHL6NDR1/HIN1-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LD98]
Coordinates
chr1:-:24431417..24433165
Molecular Weight (calculated)
28575.8 Da
IEP (calculated)
10.205
GRAVY (calculated)
-0.256
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQHQKIYPV QDPEAATARP TAPLVPRGSS RSEHGDPSKV PLNQRPQRFV PLAPPKKRRS CCCRCFCYTF CFLLLLVVAV GASIGILYLV FKPKLPDYSI
101: DRLQLTRFAL NQDSSLTTAF NVTITAKNPN EKIGIYYEDG SKITVWYMEH QLSNGSLPKF YQGHENTTVI YVEMTGQTQN ASGLRTTLEE QQQRTGNIPL
201: RIRVNQPVRV KFGKLKLFEV RFLVRCGVFV DSLATNNVIK IQSSSCKFRL RL
101: DRLQLTRFAL NQDSSLTTAF NVTITAKNPN EKIGIYYEDG SKITVWYMEH QLSNGSLPKF YQGHENTTVI YVEMTGQTQN ASGLRTTLEE QQQRTGNIPL
201: RIRVNQPVRV KFGKLKLFEV RFLVRCGVFV DSLATNNVIK IQSSSCKFRL RL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.