Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 3
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P20600_001 | Banana | nucleus, peroxisome, plasma membrane | 63.64 | 64.17 |
| GSMUA_Achr1P17720_001 | Banana | plasma membrane | 69.42 | 61.76 |
| GSMUA_Achr5P11970_001 | Banana | cytosol, peroxisome, plasma membrane | 57.85 | 56.91 |
| KRH30725 | Soybean | cytosol, nucleus, plasma membrane | 53.31 | 52.44 |
| KRG98056 | Soybean | cytosol, peroxisome, plasma membrane | 52.48 | 52.05 |
| KRH34277 | Soybean | plasma membrane | 52.89 | 50.79 |
| KRH72891 | Soybean | nucleus, peroxisome, plasma membrane | 53.31 | 50.59 |
| KRH17244 | Soybean | cytosol, peroxisome, plasma membrane | 53.72 | 50.0 |
| KRG92519 | Soybean | cytosol | 51.24 | 49.6 |
| VIT_04s0069g01010.t01 | Wine grape | plasma membrane | 48.35 | 46.61 |
| PGSC0003DMT400039340 | Potato | plastid | 49.17 | 46.12 |
| PGSC0003DMT400050761 | Potato | cytosol, plasma membrane, vacuole | 49.17 | 45.77 |
| AT1G65690.1 | Thale cress | plasma membrane, plastid | 47.52 | 45.63 |
| CDY72163 | Canola | plastid | 45.87 | 44.76 |
| VIT_16s0039g00340.t01 | Wine grape | cytosol | 52.89 | 44.44 |
| CDY16419 | Canola | plastid | 45.45 | 44.35 |
| Solyc03g019920.1.1 | Tomato | plastid | 45.04 | 44.13 |
| Bra039737.1-P | Field mustard | plasma membrane, plastid | 45.04 | 43.95 |
| PGSC0003DMT400055257 | Potato | plasma membrane, plastid | 46.69 | 43.63 |
| AT5G36970.1 | Thale cress | nucleus, peroxisome, plasma membrane | 44.21 | 43.15 |
| Solyc02g036480.1.1 | Tomato | nucleus | 45.45 | 42.97 |
| CDY53530 | Canola | cytosol, nucleus, plasma membrane | 44.21 | 41.96 |
| Bra028103.1-P | Field mustard | cytosol, nucleus, plasma membrane | 44.21 | 41.96 |
| CDX74604 | Canola | cytosol, nucleus, plasma membrane | 43.8 | 41.57 |
| AT1G54540.1 | Thale cress | cytosol, peroxisome, plasma membrane, plastid | 39.26 | 39.75 |
| Os04t0677300-01 | Rice | plastid | 41.74 | 39.61 |
| EES13101 | Sorghum | cytosol | 39.67 | 38.87 |
| Bra027969.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 42.15 | 37.92 |
| HORVU2Hr1G119500.1 | Barley | peroxisome | 39.26 | 37.7 |
| TraesCS2A01G593300.1 | Wheat | peroxisome | 39.26 | 37.55 |
| Zm00001d001832_P001 | Maize | plastid | 38.84 | 37.45 |
| TraesCS2B01G591000.1 | Wheat | peroxisome | 39.26 | 37.4 |
| TraesCS2D01G561400.1 | Wheat | peroxisome | 38.84 | 37.15 |
| Solyc02g081450.2.1 | Tomato | cytosol, plasma membrane, vacuole | 50.0 | 37.12 |
| CDY26995 | Canola | cytosol | 45.87 | 36.16 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, vacuole | 34.3 | 30.97 |
| GSMUA_Achr3P03620_001 | Banana | cytosol, peroxisome, vacuole | 32.23 | 29.55 |
| CDY38564 | Canola | plasma membrane | 46.28 | 17.67 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P14210_001 | EnsemblPlants:GSMUA_Achr3T14210_001 | EnsemblPlantsGene:GSMUA_Achr3G14210_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:LEA_2 | PANTHER:PTHR31852 | PANTHER:PTHR31852:SF48 | PFAM:PF03168 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0002966DD5 | UniProt:M0SEI8 | MapMan:35.1 | : | : | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_39.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr3G14210_001]
Coordinates
chr3:-:13330443..13331171
Molecular Weight (calculated)
26557.6 Da
IEP (calculated)
10.216
GRAVY (calculated)
-0.019
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MAERHRIHPA VDVEALLPSS SHAPSKPLQT QAAEKTDHPP PPPPPPKKRR SCCCRCLCWT VLTVVILVVI IGAIVGILYL AFDPKLPKYS VDRLAISNFT
101: VDDNMTVSAT FNLTVTTTNP NKKIGIYYRG GSHLSAWYTN TSLCSGTFPV FYQGHKNTTV LNLLLSGETQ LGSGLLQELQ QQQQTGTIPL VFRGNVPVKV
201: KLGSLKLPKV TFKVKCDIIV NSLSSSNTIS LKSSRCKFRL KL
101: VDDNMTVSAT FNLTVTTTNP NKKIGIYYRG GSHLSAWYTN TSLCSGTFPV FYQGHKNTTV LNLLLSGETQ LGSGLLQELQ QQQQTGTIPL VFRGNVPVKV
201: KLGSLKLPKV TFKVKCDIIV NSLSSSNTIS LKSSRCKFRL KL
001: MSQHQKIYPV QDPEAATARP TAPLVPRGSS RSEHGDPSKV PLNQRPQRFV PLAPPKKRRS CCCRCFCYTF CFLLLLVVAV GASIGILYLV FKPKLPDYSI
101: DRLQLTRFAL NQDSSLTTAF NVTITAKNPN EKIGIYYEDG SKITVWYMEH QLSNGSLPKF YQGHENTTVI YVEMTGQTQN ASGLRTTLEE QQQRTGNIPL
201: RIRVNQPVRV KFGKLKLFEV RFLVRCGVFV DSLATNNVIK IQSSSCKFRL RL
101: DRLQLTRFAL NQDSSLTTAF NVTITAKNPN EKIGIYYEDG SKITVWYMEH QLSNGSLPKF YQGHENTTVI YVEMTGQTQN ASGLRTTLEE QQQRTGNIPL
201: RIRVNQPVRV KFGKLKLFEV RFLVRCGVFV DSLATNNVIK IQSSSCKFRL RL
Arabidopsis Description
NHL6NDR1/HIN1-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LD98]
SUBAcon: [plasma membrane,plastid]
SUBAcon: [plasma membrane,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.