Skip to main content
crop-pal logo
Field mustard
Search for another protein from :
Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • plastid 2
  • nucleus 1
  • plasma membrane 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • cytosol 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:plastid
EpiLoc:nucleus
MultiLoc:plasma membrane
Plant-mPloc:plastid
PProwler:secretory
WoLF PSORT:cytosol
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT1G54540.1 Thale cress cytosol, peroxisome, plasma membrane, plastid 69.89 78.66
KRG92519 Soybean cytosol 52.79 56.8
KRH34277 Soybean plasma membrane 52.42 55.95
PGSC0003DMT400039340 Potato plastid 51.3 53.49
Solyc03g019920.1.1 Tomato plastid 48.33 52.63
GSMUA_Achr5P11970_001 Banana cytosol, peroxisome, plasma membrane 44.24 48.37
GSMUA_Achr9P20600_001 Banana nucleus, peroxisome, plasma membrane 42.01 47.08
VIT_16s0039g00340.t01 Wine grape cytosol 50.19 46.88
TraesCS1A01G167100.1 Wheat cytosol, nucleus, peroxisome 41.64 44.27
Bra039737.1-P Field mustard plasma membrane, plastid 39.78 43.15
HORVU1Hr1G044080.1 Barley cytosol, endoplasmic reticulum, peroxisome 40.89 42.31
GSMUA_Achr3P14210_001 Banana plasma membrane 37.92 42.15
TraesCS1D01G173800.1 Wheat cytosol, nucleus, plasma membrane 41.64 42.11
TraesCS1B01G183500.1 Wheat cytosol, nucleus, plasma membrane 41.64 42.11
Bra028103.1-P Field mustard cytosol, nucleus, plasma membrane 36.8 38.82
Zm00001d013947_P001 Maize cytosol 37.92 38.49
GSMUA_Achr1P17720_001 Banana plasma membrane 38.29 37.87
KXG38271 Sorghum cytosol, nucleus, vacuole 37.92 36.96
Zm00001d032620_P001 Maize cytosol 37.17 36.5
EES13101 Sorghum cytosol 32.71 35.63
TraesCS4D01G091900.1 Wheat cytosol, endoplasmic reticulum, peroxisome 29.74 35.4
OQU85155 Sorghum extracellular, plasma membrane 25.65 35.2
TraesCS2D01G561400.1 Wheat peroxisome 32.71 34.78
TraesCS4A01G217000.1 Wheat cytosol, endoplasmic reticulum, peroxisome, plastid 29.0 34.51
Os04t0677300-01 Rice plastid 32.71 34.51
TraesCS4A01G216800.1 Wheat cytosol, endoplasmic reticulum, peroxisome 28.25 34.39
HORVU2Hr1G119500.1 Barley peroxisome 31.97 34.13
TraesCS2A01G593300.1 Wheat peroxisome 31.97 33.99
TraesCS2B01G591000.1 Wheat peroxisome 31.97 33.86
TraesCS4D01G092200.1 Wheat cytosol, endoplasmic reticulum, peroxisome 28.25 33.78
TraesCS4B01G095300.1 Wheat cytosol, endoplasmic reticulum, peroxisome 27.88 33.19
HORVU4Hr1G018760.1 Barley cytosol, endoplasmic reticulum, peroxisome 28.62 32.91
TraesCS4B01G095400.1 Wheat cytosol, endoplasmic reticulum, peroxisome 28.25 32.76
Zm00001d001832_P001 Maize plastid 29.74 31.87
OQU90204 Sorghum mitochondrion, plastid 25.28 31.19
Os02t0507900-00 Rice cytosol 27.51 29.6
Bra034321.1-P Field mustard cytosol, peroxisome, plasma membrane 27.51 28.46
EES06862 Sorghum peroxisome 24.91 28.39
Bra000526.1-P Field mustard cytosol, peroxisome, plasma membrane 26.77 28.12
HORVU4Hr1G018720.1 Barley cytosol 13.75 23.72
Bra006594.1-P Field mustard nucleus 23.79 21.19
Bra020148.1-P Field mustard cytosol 23.05 21.16
OQU88420 Sorghum mitochondrion 26.77 20.63
Bra020147.1-P Field mustard cytosol 23.05 20.46
Protein Annotations
EnsemblPlants:Bra027969.1EnsemblPlants:Bra027969.1-PEnsemblPlantsGene:Bra027969GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:LEA_2PANTHER:PTHR31852PANTHER:PTHR31852:SF48PFAM:PF03168SEG:segTMHMM:TMhelix
UniParc:UPI0002542234UniProt:M4EGQ5MapMan:35.1:::
Description
AT1G54540 (E=1e-076) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, flower, root; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: harpin-induced protein-related / HIN1-related / harpin-responsive protein-related (TAIR:AT1G65690.1); Has 612 Blast hits to 611 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 612; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Coordinates
chrA09:+:10229697..10230506
Molecular Weight (calculated)
30183.5 Da
IEP (calculated)
10.902
GRAVY (calculated)
-0.217
Length
269 amino acids
Sequence
(BLAST)
001: MGDLQQRVHP VLQMEANNKK ISPAGGKTEH LPTQRPFPPP ATVENKKASP AREKTQQLLP VQRPLPPPPL MVRNKKRNLC CRIFCWGLSL LIIGLIALAV
101: AITVIYFVFH PKIPQYEVNS LRVSNLGINL DLSLSALFKV EITARNPNEK IGIYYEKGGR LQVWYTKTKL CEGPIPKFYQ GHRNVTRLNV DLAGRAQFGN
201: TVLSALQQQQ QTGRVPLDLK VDAPVSVKLG KLKLRKVRIL GNCKIVVDSL STNNRINIKA SDCKFRLKL
Best Arabidopsis Sequence Match ( AT1G54540.1 )
(BLAST)
001: MGDQQKIHPV LQMEANKTKT TTPAPGKTVL LPVQRPIPPP VIPSKNRNMC CKIFCWVLSL LVIALIALAI AVAVVYFVFH PKLPSYEVNS LRVTNLGINL
101: DLSLSAEFKV EITARNPNEK IGIYYEKGGH IGVWYDKTKL CEGPIPRFYQ GHRNVTKLNV ALTGRAQYGN TVLAALQQQQ QTGRVPLDLK VNAPVAIKLG
201: NLKMKKIRIL GSCKLVVDSL STNNNINIKA SDCSFKAKL
Arabidopsis Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Source:UniProtKB/TrEMBL;Acc:Q9SLI0]
SUBAcon: [peroxisome,plastid,cytosol,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.