Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d032620_P001 | Maize | cytosol | 87.92 | 85.04 |
| KXG38271 | Sorghum | cytosol, nucleus, vacuole | 84.53 | 81.16 |
| OQU85155 | Sorghum | extracellular, plasma membrane | 56.6 | 76.53 |
| TraesCS1D01G173800.1 | Wheat | cytosol, nucleus, plasma membrane | 73.21 | 72.93 |
| TraesCS1B01G183500.1 | Wheat | cytosol, nucleus, plasma membrane | 73.21 | 72.93 |
| HORVU1Hr1G044080.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 71.32 | 72.69 |
| TraesCS1A01G167100.1 | Wheat | cytosol, nucleus, peroxisome | 68.3 | 71.54 |
| OQU90204 | Sorghum | mitochondrion, plastid | 52.83 | 64.22 |
| GSMUA_Achr5P11970_001 | Banana | cytosol, peroxisome, plasma membrane | 53.58 | 57.72 |
| KRG98056 | Soybean | cytosol, peroxisome, plasma membrane | 43.4 | 47.13 |
| KRH30725 | Soybean | cytosol, nucleus, plasma membrane | 43.4 | 46.75 |
| KRH34277 | Soybean | plasma membrane | 44.15 | 46.43 |
| PGSC0003DMT400039340 | Potato | plastid | 44.53 | 45.74 |
| Solyc03g019920.1.1 | Tomato | plastid | 41.89 | 44.94 |
| KRG92519 | Soybean | cytosol | 41.89 | 44.4 |
| VIT_04s0069g01010.t01 | Wine grape | plasma membrane | 40.38 | 42.63 |
| AT1G65690.1 | Thale cress | plasma membrane, plastid | 40.38 | 42.46 |
| PGSC0003DMT400050761 | Potato | cytosol, plasma membrane, vacuole | 41.51 | 42.31 |
| KRH72891 | Soybean | nucleus, peroxisome, plasma membrane | 40.38 | 41.96 |
| AT5G36970.1 | Thale cress | nucleus, peroxisome, plasma membrane | 39.25 | 41.94 |
| KRH17244 | Soybean | cytosol, peroxisome, plasma membrane | 40.75 | 41.54 |
| CDY16419 | Canola | plastid | 38.49 | 41.13 |
| Bra039737.1-P | Field mustard | plasma membrane, plastid | 38.49 | 41.13 |
| VIT_16s0039g00340.t01 | Wine grape | cytosol | 44.53 | 40.97 |
| CDY72163 | Canola | plastid | 38.11 | 40.73 |
| Zm00001d001832_P001 | Maize | plastid | 38.11 | 40.24 |
| PGSC0003DMT400055257 | Potato | plasma membrane, plastid | 39.25 | 40.15 |
| OQU88420 | Sorghum | mitochondrion | 52.08 | 39.54 |
| Solyc02g036480.1.1 | Tomato | nucleus | 38.11 | 39.45 |
| CDY53530 | Canola | cytosol, nucleus, plasma membrane | 37.74 | 39.22 |
| Bra028103.1-P | Field mustard | cytosol, nucleus, plasma membrane | 36.6 | 38.04 |
| Bra027969.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 38.49 | 37.92 |
| AT1G54540.1 | Thale cress | cytosol, peroxisome, plasma membrane, plastid | 33.96 | 37.66 |
| CDX74604 | Canola | cytosol, nucleus, plasma membrane | 36.23 | 37.65 |
| Solyc02g081450.2.1 | Tomato | cytosol, plasma membrane, vacuole | 41.13 | 33.44 |
| CDY26995 | Canola | cytosol | 38.49 | 33.22 |
| Zm00001d005010_P001 | Maize | plastid | 34.72 | 32.39 |
| Zm00001d005265_P001 | Maize | endoplasmic reticulum, plasma membrane, plastid | 24.91 | 31.73 |
| Zm00001d043128_P001 | Maize | cytosol | 30.94 | 27.7 |
| Zm00001d028765_P001 | Maize | plastid | 24.91 | 21.15 |
| CDY38564 | Canola | plasma membrane | 38.11 | 15.93 |
Protein Annotations
| EMBL:EU956020 | EnsemblPlants:Zm00001d013947_P001 | EnsemblPlants:Zm00001d013947_T001 | EnsemblPlantsGene:Zm00001d013947 | EntrezGene:100281231 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:LEA_2 | PANTHER:PTHR31852 | PANTHER:PTHR31852:SF1 | PFAM:PF03168 |
| ProteinID:AQK64855.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000182B463 | UniProt:B6STF5 | MapMan:35.1 |
Description
NHL25
Coordinates
chr5:-:25632561..25633358
Molecular Weight (calculated)
28329.6 Da
IEP (calculated)
10.769
GRAVY (calculated)
-0.019
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MADHQRIHPA DLEAGNRPLM PGGSFRSDKG DPAQRAKQQQ QQGYVPGALP PPPRRVAPPA PLPPPKRRGR GCCCRLLCCA VISAAVLAVL AAAAAGALYL
101: ALDPKAPRYS VDRLSVSAFQ VDPATLAARA RFDVAVAATN PNSRIGIHYE RGSSLGVWYQ SYRLARGALP AFYQGHRNTT VLALAMAGEA QLGSAAVVSG
201: MQDAQRTGAV PLVFRADVPV RVQLGTFKLW KVTARVRCDL VVDRLMDVTS LIKIKAGNCK FSLKL
101: ALDPKAPRYS VDRLSVSAFQ VDPATLAARA RFDVAVAATN PNSRIGIHYE RGSSLGVWYQ SYRLARGALP AFYQGHRNTT VLALAMAGEA QLGSAAVVSG
201: MQDAQRTGAV PLVFRADVPV RVQLGTFKLW KVTARVRCDL VVDRLMDVTS LIKIKAGNCK FSLKL
001: MSQHQKIYPV QDPEAATARP TAPLVPRGSS RSEHGDPSKV PLNQRPQRFV PLAPPKKRRS CCCRCFCYTF CFLLLLVVAV GASIGILYLV FKPKLPDYSI
101: DRLQLTRFAL NQDSSLTTAF NVTITAKNPN EKIGIYYEDG SKITVWYMEH QLSNGSLPKF YQGHENTTVI YVEMTGQTQN ASGLRTTLEE QQQRTGNIPL
201: RIRVNQPVRV KFGKLKLFEV RFLVRCGVFV DSLATNNVIK IQSSSCKFRL RL
101: DRLQLTRFAL NQDSSLTTAF NVTITAKNPN EKIGIYYEDG SKITVWYMEH QLSNGSLPKF YQGHENTTVI YVEMTGQTQN ASGLRTTLEE QQQRTGNIPL
201: RIRVNQPVRV KFGKLKLFEV RFLVRCGVFV DSLATNNVIK IQSSSCKFRL RL
Arabidopsis Description
NHL6NDR1/HIN1-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LD98]
SUBAcon: [plasma membrane,plastid]
SUBAcon: [plasma membrane,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.