Factsheet for PGSC0003DMT400050761

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole, cytosol

Predictor Summary:

nucleus 2
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 2
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, vacuole
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	vacuole
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g081450.2.1	Tomato	cytosol, plasma membrane, vacuole	96.15	76.69
PGSC0003DMT400055257	Potato	plasma membrane, plastid	64.62	64.86
VIT_04s0069g01010.t01	Wine grape	plasma membrane	56.54	58.57
PGSC0003DMT400039340	Potato	plastid	55.0	55.43
KRH30725	Soybean	cytosol, nucleus, plasma membrane	51.54	54.47
KRG98056	Soybean	cytosol, peroxisome, plasma membrane	50.77	54.1
GSMUA_Achr5P11970_001	Banana	cytosol, peroxisome, plasma membrane	50.0	52.85
KRH72891	Soybean	nucleus, peroxisome, plasma membrane	50.0	50.98
AT5G36970.1	Thale cress	nucleus, peroxisome, plasma membrane	48.46	50.81
CDY72163	Canola	plastid	48.46	50.81
CDY16419	Canola	plastid	48.46	50.81
Bra039737.1-P	Field mustard	plasma membrane, plastid	48.08	50.4
AT1G65690.1	Thale cress	plasma membrane, plastid	48.85	50.4
KRH17244	Soybean	cytosol, peroxisome, plasma membrane	49.62	49.62
GSMUA_Achr3P14210_001	Banana	plasma membrane	45.77	49.17
CDY53530	Canola	cytosol, nucleus, plasma membrane	46.92	47.84
Bra028103.1-P	Field mustard	cytosol, nucleus, plasma membrane	46.92	47.84
GSMUA_Achr9P20600_001	Banana	nucleus, peroxisome, plasma membrane	43.46	47.08
CDX74604	Canola	cytosol, nucleus, plasma membrane	46.15	47.06
HORVU1Hr1G044080.1	Barley	cytosol, endoplasmic reticulum, peroxisome	46.15	46.15
TraesCS1D01G173800.1	Wheat	cytosol, nucleus, plasma membrane	46.92	45.86
TraesCS1B01G183500.1	Wheat	cytosol, nucleus, plasma membrane	46.92	45.86
TraesCS1A01G167100.1	Wheat	cytosol, nucleus, peroxisome	44.62	45.85
KXG38271	Sorghum	cytosol, nucleus, vacuole	44.23	41.67
Zm00001d032620_P001	Maize	cytosol	43.85	41.61
GSMUA_Achr1P17720_001	Banana	plasma membrane	43.46	41.54
Zm00001d013947_P001	Maize	cytosol	42.31	41.51
CDY26995	Canola	cytosol	47.31	40.07
OQU85155	Sorghum	extracellular, plasma membrane	30.0	39.8
TraesCS4A01G216800.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	30.0	35.29
TraesCS4A01G217000.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	30.38	34.96
HORVU2Hr1G119500.1	Barley	peroxisome	33.85	34.92
TraesCS4D01G091900.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	30.0	34.51
Os04t0677300-01	Rice	plastid	33.85	34.51
TraesCS4B01G095400.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	30.77	34.48
TraesCS2D01G561400.1	Wheat	peroxisome	33.46	34.39
HORVU4Hr1G018760.1	Barley	cytosol, endoplasmic reticulum, peroxisome	30.77	34.19
PGSC0003DMT400022474	Potato	plastid	35.38	34.07
EES13101	Sorghum	cytosol	32.31	34.01
PGSC0003DMT400005086	Potato	plastid	34.23	33.84
TraesCS4D01G092200.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	29.23	33.78
TraesCS4B01G095300.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	29.23	33.63
TraesCS2A01G593300.1	Wheat	peroxisome	32.69	33.6
PGSC0003DMT400047270	Potato	cytosol	27.69	33.49
OQU90204	Sorghum	mitochondrion, plastid	28.08	33.49
TraesCS2B01G591000.1	Wheat	peroxisome	32.69	33.46
Zm00001d001832_P001	Maize	plastid	31.92	33.07
PGSC0003DMT400047271	Potato	cytosol, golgi, plasma membrane	28.08	32.59
EES06862	Sorghum	peroxisome	28.08	30.93
Os02t0507900-00	Rice	cytosol	29.23	30.4
HORVU4Hr1G018720.1	Barley	cytosol	14.62	24.36
OQU88420	Sorghum	mitochondrion	29.62	22.06
CDY38564	Canola	plasma membrane	47.69	19.56

Protein Annotations

EnsemblPlants:PGSC0003DMT400050761	EnsemblPlantsGene:PGSC0003DMG401019715	EntrezGene:107060790	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:LEA_2	PANTHER:PTHR31852	PANTHER:PTHR31852:SF1	PFAM:PF03168	PGSC:PGSC0003DMG401019715	RefSeq:XP_015164581.1
SEG:seg	SUPFAM:SSF117070	TMHMM:TMhelix	UniParc:UPI000295C767	UniProt:M1BQT4	MapMan:35.1

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG401019715]

Coordinates

chr2:-:37044951..37045733

Molecular Weight (calculated)

29592.4 Da

IEP (calculated)

9.921

GRAVY (calculated)

-0.217

Length

260 amino acids

Sequence
(BLAST)

001: MAEQQRIHPV PEPEHELPVQ KPSVPLVPKG SFSSEKGDPE KQQQQQEPPF RRTIPYYPPL KPPKRRCCSC KRCLCCTCCL LLLIIIIIAA LSAAFYFVFQ
101: PKIPKYSVDS MRITQFNFNN DMSLLFATFN VNITARNPNK KIGIYYESGS QLSVWYTGVQ LCEGSLPRFY QGHQNTTVLS LDLSGQTQNV TGLLQALQVD
201: QQRGSIPLIL RAKVPVKLKI GKLKLMKWNF LVKCKLDVDR LSANNAIRIR NSDCQFGFRL

Best Arabidopsis Sequence Match ( AT1G65690.1 )
(BLAST)

001: MSQHQKIYPV QDPEAATARP TAPLVPRGSS RSEHGDPSKV PLNQRPQRFV PLAPPKKRRS CCCRCFCYTF CFLLLLVVAV GASIGILYLV FKPKLPDYSI
101: DRLQLTRFAL NQDSSLTTAF NVTITAKNPN EKIGIYYEDG SKITVWYMEH QLSNGSLPKF YQGHENTTVI YVEMTGQTQN ASGLRTTLEE QQQRTGNIPL
201: RIRVNQPVRV KFGKLKLFEV RFLVRCGVFV DSLATNNVIK IQSSSCKFRL RL

Arabidopsis Description

NHL6NDR1/HIN1-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LD98]
SUBAcon: [plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.