Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 2
- mitochondrion 1
- plastid 1
- plasma membrane 3
- golgi 2
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d001832_P001 | Maize | plastid | 87.45 | 86.06 |
| Os04t0677300-01 | Rice | plastid | 74.9 | 72.55 |
| HORVU2Hr1G119500.1 | Barley | peroxisome | 73.28 | 71.83 |
| TraesCS2B01G591000.1 | Wheat | peroxisome | 72.47 | 70.47 |
| TraesCS2A01G593300.1 | Wheat | peroxisome | 72.06 | 70.36 |
| TraesCS2D01G561400.1 | Wheat | peroxisome | 71.66 | 69.96 |
| GSMUA_Achr9P20600_001 | Banana | nucleus, peroxisome, plasma membrane | 44.53 | 45.83 |
| GSMUA_Achr1P17720_001 | Banana | plasma membrane | 44.53 | 40.44 |
| GSMUA_Achr3P14210_001 | Banana | plasma membrane | 38.87 | 39.67 |
| CDY16419 | Canola | plastid | 39.27 | 39.11 |
| KRG98056 | Soybean | cytosol, peroxisome, plasma membrane | 38.46 | 38.93 |
| Bra039737.1-P | Field mustard | plasma membrane, plastid | 38.87 | 38.71 |
| CDY72163 | Canola | plastid | 38.87 | 38.71 |
| AT1G65690.1 | Thale cress | plasma membrane, plastid | 39.27 | 38.49 |
| AT5G36970.1 | Thale cress | nucleus, peroxisome, plasma membrane | 38.46 | 38.31 |
| OQU85155 | Sorghum | extracellular, plasma membrane | 30.36 | 38.27 |
| VIT_04s0069g01010.t01 | Wine grape | plasma membrane | 38.06 | 37.45 |
| CDY53530 | Canola | cytosol, nucleus, plasma membrane | 38.46 | 37.25 |
| KXG38271 | Sorghum | cytosol, nucleus, vacuole | 41.3 | 36.96 |
| Bra028103.1-P | Field mustard | cytosol, nucleus, plasma membrane | 38.06 | 36.86 |
| CDX74604 | Canola | cytosol, nucleus, plasma membrane | 38.06 | 36.86 |
| KRH34277 | Soybean | plasma membrane | 37.25 | 36.51 |
| KRG92519 | Soybean | cytosol | 36.84 | 36.4 |
| KRH30725 | Soybean | cytosol, nucleus, plasma membrane | 36.03 | 36.18 |
| AT1G54540.1 | Thale cress | cytosol, peroxisome, plasma membrane, plastid | 34.82 | 35.98 |
| KRH72891 | Soybean | nucleus, peroxisome, plasma membrane | 36.84 | 35.69 |
| KRH17244 | Soybean | cytosol, peroxisome, plasma membrane | 37.25 | 35.38 |
| Solyc02g036480.1.1 | Tomato | nucleus | 36.03 | 34.77 |
| PGSC0003DMT400055257 | Potato | plasma membrane, plastid | 36.44 | 34.75 |
| VIT_16s0039g00340.t01 | Wine grape | cytosol | 39.27 | 33.68 |
| Bra027969.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 35.63 | 32.71 |
| OQU90204 | Sorghum | mitochondrion, plastid | 28.74 | 32.57 |
| PGSC0003DMT400050761 | Potato | cytosol, plasma membrane, vacuole | 34.01 | 32.31 |
| PGSC0003DMT400039340 | Potato | plastid | 33.6 | 32.17 |
| CDY26995 | Canola | cytosol | 38.87 | 31.27 |
| EER98613 | Sorghum | endoplasmic reticulum, plasma membrane, plastid | 26.32 | 31.25 |
| Solyc03g019920.1.1 | Tomato | plastid | 30.77 | 30.77 |
| EES06862 | Sorghum | peroxisome | 26.72 | 27.97 |
| EES15581 | Sorghum | cytosol, mitochondrion, peroxisome | 32.39 | 26.23 |
| Solyc02g081450.2.1 | Tomato | cytosol, plasma membrane, vacuole | 34.01 | 25.77 |
| OQU87732 | Sorghum | cytosol | 30.77 | 25.76 |
| OQU88420 | Sorghum | mitochondrion | 28.34 | 20.06 |
| EES09185 | Sorghum | plastid | 31.17 | 19.44 |
| CDY38564 | Canola | plasma membrane | 38.87 | 15.14 |
Protein Annotations
| EnsemblPlants:EES13101 | EnsemblPlantsGene:SORBI_3006G267000 | EntrezGene:8076462 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:LEA_2 | PANTHER:PTHR31852 | PANTHER:PTHR31852:SF20 | PFAM:PF03168 | ProteinID:EES13101 | ProteinID:EES13101.1 |
| RefSeq:XP_002448773.1 | SEG:seg | TMHMM:TMhelix | unigene:Sbi.6892 | UniParc:UPI000189D736 | UniProt:C5YAI6 |
| MapMan:35.1 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr6:-:60042260..60044674
Molecular Weight (calculated)
27136.0 Da
IEP (calculated)
10.400
GRAVY (calculated)
-0.066
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MTDYHRIHPV SVGSPPPSAP PEHAKKPSHD QLLPVTAPPP YAPAPLPPPR RQRRHSRCCR CVCYTFLALV LLVVALGVTA GILYLVFRPK IPTFNVDRLT
101: VTRFDVNTTT ATVTDAFDVD VTATNPNRRI GIYYDGGDVT ASFNGTVLCR GAFPALYQGH RTTVHPNISL AGETRLDSDV AAQLLQQRQA GFVPLTVRAR
201: VPIRIKFGAI RLWKMTGKAN CNLVVDNIQA GTQLNIRSNT CSFKLKI
101: VTRFDVNTTT ATVTDAFDVD VTATNPNRRI GIYYDGGDVT ASFNGTVLCR GAFPALYQGH RTTVHPNISL AGETRLDSDV AAQLLQQRQA GFVPLTVRAR
201: VPIRIKFGAI RLWKMTGKAN CNLVVDNIQA GTQLNIRSNT CSFKLKI
001: MSDHQKIHPV SDPEAPPHPT APLVPRGSSR SEHGDPTKTQ QAAPLDPPRE KKGSRSCWCR CVCYTLLVLF LLIVIVGAIV GILYLVFRPK FPDYNIDRLQ
101: LTRFQLNQDL SLSTAFNVTI TAKNPNEKIG IYYEDGSKIS VLYMQTRISN GSLPKFYQGH ENTTIILVEM TGFTQNATSL MTTLQEQQRL TGSIPLRIRV
201: TQPVRIKLGK LKLMKVRFLV RCGVSVDSLA ANSVIRVRSS NCKYRFRL
101: LTRFQLNQDL SLSTAFNVTI TAKNPNEKIG IYYEDGSKIS VLYMQTRISN GSLPKFYQGH ENTTIILVEM TGFTQNATSL MTTLQEQQRL TGSIPLRIRV
201: TQPVRIKLGK LKLMKVRFLV RCGVSVDSLA ANSVIRVRSS NCKYRFRL
Arabidopsis Description
NHL25NHL25 [Source:UniProtKB/TrEMBL;Acc:A0A178UFH9]
SUBAcon: [peroxisome,nucleus,plasma membrane]
SUBAcon: [peroxisome,nucleus,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.