Factsheet for GSMUA_Achr1P17720_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P14210_001	Banana	plasma membrane	61.76	69.42
GSMUA_Achr9P20600_001	Banana	nucleus, peroxisome, plasma membrane	56.99	64.58
GSMUA_Achr5P11970_001	Banana	cytosol, peroxisome, plasma membrane	48.9	54.06
KRG98056	Soybean	cytosol, peroxisome, plasma membrane	45.59	50.82
KRH30725	Soybean	cytosol, nucleus, plasma membrane	45.22	50.0
KRH72891	Soybean	nucleus, peroxisome, plasma membrane	46.32	49.41
KRH17244	Soybean	cytosol, peroxisome, plasma membrane	46.69	48.85
EES13101	Sorghum	cytosol	40.44	44.53
KRH34277	Soybean	plasma membrane	41.18	44.44
KRG92519	Soybean	cytosol	40.81	44.4
AT5G36970.1	Thale cress	nucleus, peroxisome, plasma membrane	39.71	43.55
CDY72163	Canola	plastid	39.71	43.55
Os04t0677300-01	Rice	plastid	40.81	43.53
PGSC0003DMT400050761	Potato	cytosol, plasma membrane, vacuole	41.54	43.46
Zm00001d001832_P001	Maize	plastid	40.07	43.43
HORVU2Hr1G119500.1	Barley	peroxisome	40.07	43.25
CDY16419	Canola	plastid	39.34	43.15
CDY53530	Canola	cytosol, nucleus, plasma membrane	40.44	43.14
CDX74604	Canola	cytosol, nucleus, plasma membrane	40.44	43.14
Bra028103.1-P	Field mustard	cytosol, nucleus, plasma membrane	40.44	43.14
VIT_04s0069g01010.t01	Wine grape	plasma membrane	39.71	43.03
Bra039737.1-P	Field mustard	plasma membrane, plastid	38.97	42.74
AT1G65690.1	Thale cress	plasma membrane, plastid	39.34	42.46
TraesCS2D01G561400.1	Wheat	peroxisome	39.34	42.29
TraesCS2B01G591000.1	Wheat	peroxisome	38.97	41.73
PGSC0003DMT400055257	Potato	plasma membrane, plastid	39.71	41.7
Solyc02g036480.1.1	Tomato	nucleus	38.97	41.41
TraesCS2A01G593300.1	Wheat	peroxisome	38.24	41.11
PGSC0003DMT400039340	Potato	plastid	38.97	41.09
VIT_16s0039g00340.t01	Wine grape	cytosol	43.01	40.62
AT1G54540.1	Thale cress	cytosol, peroxisome, plasma membrane, plastid	35.29	40.17
Solyc03g019920.1.1	Tomato	plastid	35.66	39.27
Bra027969.1-P	Field mustard	cytosol, peroxisome, plasma membrane	37.87	38.29
CDY26995	Canola	cytosol	40.81	36.16
Solyc02g081450.2.1	Tomato	cytosol, plasma membrane, vacuole	41.54	34.66
GSMUA_Achr11P...	Banana	cytosol, peroxisome, vacuole	29.78	30.22
GSMUA_Achr3P03620_001	Banana	cytosol, peroxisome, vacuole	28.31	29.17
CDY38564	Canola	plasma membrane	41.18	17.67

Protein Annotations

EnsemblPlants:GSMUA_Achr1P17720_001	EnsemblPlants:GSMUA_Achr1T17720_001	EnsemblPlantsGene:GSMUA_Achr1G17720_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:LEA_2	PANTHER:PTHR31852	PANTHER:PTHR31852:SF1	PFAM:PF03168	SEG:seg	TMHMM:TMhelix
UniParc:UPI000295E59C	UniProt:M0S0T0	MapMan:35.1	:	:	:

Description

Putative harpin-induced protein 1 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G17720_001]

Coordinates

chr1:+:13171793..13172611

Molecular Weight (calculated)

30062.3 Da

IEP (calculated)

10.350

GRAVY (calculated)

-0.168

Length

272 amino acids

Sequence
(BLAST)

001: MNEAKSSLET HEAFSRQTSL HNPSSLHAVD FILGLEMAEP HRIHPAAVDV ESPLPSPSQA AKSGENDQQQ PKSSRRRRRS RCCRCLCCTA LTLVVLIIAI
101: GATVGILYLV FRPKIPKYSV DRLTLSNFTV DDDTTISATF NLTVTARNPN RRIGIYYGHG SHLSAWYNGT RLCTGAFPVF YQGHRNTTVV SLLLAGETQL
201: GSGLLQELQQ QQQQTGTVLL DFRGSVPVRV KLGRLKLPKV SFKVRCNIVV NSLSSSNSIS LRSSHCKFKL KL

Best Arabidopsis Sequence Match ( AT1G65690.1 )
(BLAST)

001: MSQHQKIYPV QDPEAATARP TAPLVPRGSS RSEHGDPSKV PLNQRPQRFV PLAPPKKRRS CCCRCFCYTF CFLLLLVVAV GASIGILYLV FKPKLPDYSI
101: DRLQLTRFAL NQDSSLTTAF NVTITAKNPN EKIGIYYEDG SKITVWYMEH QLSNGSLPKF YQGHENTTVI YVEMTGQTQN ASGLRTTLEE QQQRTGNIPL
201: RIRVNQPVRV KFGKLKLFEV RFLVRCGVFV DSLATNNVIK IQSSSCKFRL RL

Arabidopsis Description

NHL6NDR1/HIN1-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LD98]
SUBAcon: [plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.