Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- vacuole 2
- extracellular 1
- endoplasmic reticulum 1
- plasma membrane 1
- golgi 1
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400039340 | Potato | plastid | 96.76 | 92.64 |
| KRH34277 | Soybean | plasma membrane | 65.99 | 64.68 |
| KRG92519 | Soybean | cytosol | 65.18 | 64.4 |
| VIT_16s0039g00340.t01 | Wine grape | cytosol | 65.99 | 56.6 |
| GSMUA_Achr5P11970_001 | Banana | cytosol, peroxisome, plasma membrane | 53.04 | 53.25 |
| Solyc02g036480.1.1 | Tomato | nucleus | 51.42 | 49.61 |
| AT1G54540.1 | Thale cress | cytosol, peroxisome, plasma membrane, plastid | 46.96 | 48.54 |
| Bra027969.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 52.63 | 48.33 |
| GSMUA_Achr9P20600_001 | Banana | nucleus, peroxisome, plasma membrane | 44.94 | 46.25 |
| TraesCS1A01G167100.1 | Wheat | cytosol, nucleus, peroxisome | 46.15 | 45.06 |
| GSMUA_Achr3P14210_001 | Banana | plasma membrane | 44.13 | 45.04 |
| HORVU1Hr1G044080.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 46.56 | 44.23 |
| TraesCS1B01G183500.1 | Wheat | cytosol, nucleus, plasma membrane | 47.37 | 43.98 |
| TraesCS1D01G173800.1 | Wheat | cytosol, nucleus, plasma membrane | 46.96 | 43.61 |
| Zm00001d013947_P001 | Maize | cytosol | 44.94 | 41.89 |
| Solyc02g081450.2.1 | Tomato | cytosol, plasma membrane, vacuole | 53.85 | 40.8 |
| Zm00001d032620_P001 | Maize | cytosol | 44.94 | 40.51 |
| KXG38271 | Sorghum | cytosol, nucleus, vacuole | 44.13 | 39.49 |
| OQU85155 | Sorghum | extracellular, plasma membrane | 30.77 | 38.78 |
| GSMUA_Achr1P17720_001 | Banana | plasma membrane | 39.27 | 35.66 |
| OQU90204 | Sorghum | mitochondrion, plastid | 29.96 | 33.95 |
| TraesCS4A01G216800.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 29.96 | 33.48 |
| TraesCS4D01G091900.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 30.36 | 33.19 |
| TraesCS4A01G217000.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome, plastid | 30.36 | 33.19 |
| HORVU2Hr1G119500.1 | Barley | peroxisome | 33.2 | 32.54 |
| TraesCS4B01G095400.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 30.36 | 32.33 |
| HORVU4Hr1G018760.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 30.36 | 32.05 |
| TraesCS2D01G561400.1 | Wheat | peroxisome | 32.79 | 32.02 |
| TraesCS2A01G593300.1 | Wheat | peroxisome | 32.39 | 31.62 |
| TraesCS4D01G092200.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 28.74 | 31.56 |
| TraesCS2B01G591000.1 | Wheat | peroxisome | 32.39 | 31.5 |
| Os04t0677300-01 | Rice | plastid | 32.39 | 31.37 |
| TraesCS4B01G095300.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 28.34 | 30.97 |
| EES13101 | Sorghum | cytosol | 30.77 | 30.77 |
| Os02t0507900-00 | Rice | cytosol | 30.77 | 30.4 |
| Zm00001d001832_P001 | Maize | plastid | 30.77 | 30.28 |
| EES06862 | Sorghum | peroxisome | 27.53 | 28.81 |
| Solyc01g009160.2.1 | Tomato | plastid | 29.96 | 28.03 |
| Solyc07g054250.2.1 | Tomato | cytosol, nucleus, plastid | 23.48 | 21.4 |
| HORVU4Hr1G018720.1 | Barley | cytosol | 13.36 | 21.15 |
| OQU88420 | Sorghum | mitochondrion | 29.55 | 20.92 |
Protein Annotations
| EnsemblPlants:Solyc03g019920.1.1 | EnsemblPlantsGene:Solyc03g019920.1 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:LEA_2 |
| PANTHER:PTHR31852 | PANTHER:PTHR31852:SF48 | PFAM:PF03168 | SEG:seg | TMHMM:TMhelix | UniParc:UPI00027688E2 |
| UniProt:K4BEW4 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr3:-:61287056..61287799
Molecular Weight (calculated)
27762.6 Da
IEP (calculated)
10.719
GRAVY (calculated)
-0.037
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAPPPTRTT RPLVPRGSFK SEKGDPTRLF QQPTVNQPVR RTTPVMYSRP PTKKRSCICK CICWTISLII LLLIIIAAIA GILYLVFKPK IPQYSVDNLR
101: ISDLRLNFDM SLYARFNVRI TAVNPNKKIG IYYEKGSHLS VWYKNTQLCK GSLPKFYQGH QNRTVLDVAL TGQSEYGNTL MSAIQEAAQT GRIPLDLKIQ
201: VPVSVKLGRL KLRKVKILGD CLLIVDSLSA NSLVRIKAST CKFGLKL
101: ISDLRLNFDM SLYARFNVRI TAVNPNKKIG IYYEKGSHLS VWYKNTQLCK GSLPKFYQGH QNRTVLDVAL TGQSEYGNTL MSAIQEAAQT GRIPLDLKIQ
201: VPVSVKLGRL KLRKVKILGD CLLIVDSLSA NSLVRIKAST CKFGLKL
001: MGDQQKIHPV LQMEANKTKT TTPAPGKTVL LPVQRPIPPP VIPSKNRNMC CKIFCWVLSL LVIALIALAI AVAVVYFVFH PKLPSYEVNS LRVTNLGINL
101: DLSLSAEFKV EITARNPNEK IGIYYEKGGH IGVWYDKTKL CEGPIPRFYQ GHRNVTKLNV ALTGRAQYGN TVLAALQQQQ QTGRVPLDLK VNAPVAIKLG
201: NLKMKKIRIL GSCKLVVDSL STNNNINIKA SDCSFKAKL
101: DLSLSAEFKV EITARNPNEK IGIYYEKGGH IGVWYDKTKL CEGPIPRFYQ GHRNVTKLNV ALTGRAQYGN TVLAALQQQQ QTGRVPLDLK VNAPVAIKLG
201: NLKMKKIRIL GSCKLVVDSL STNNNINIKA SDCSFKAKL
Arabidopsis Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Source:UniProtKB/TrEMBL;Acc:Q9SLI0]
SUBAcon: [peroxisome,plastid,cytosol,plasma membrane]
SUBAcon: [peroxisome,plastid,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.