Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- peroxisome 1
- mitochondrion 1
- plastid 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH34277 | Soybean | plasma membrane | 63.89 | 73.02 |
| KRG92519 | Soybean | cytosol | 60.76 | 70.0 |
| PGSC0003DMT400039340 | Potato | plastid | 59.38 | 66.28 |
| Solyc03g019920.1.1 | Tomato | plastid | 56.6 | 65.99 |
| VIT_04s0069g01010.t01 | Wine grape | plasma membrane | 55.56 | 63.74 |
| GSMUA_Achr5P11970_001 | Banana | cytosol, peroxisome, plasma membrane | 51.74 | 60.57 |
| AT1G54540.1 | Thale cress | cytosol, peroxisome, plasma membrane, plastid | 46.18 | 55.65 |
| GSMUA_Achr3P14210_001 | Banana | plasma membrane | 44.44 | 52.89 |
| GSMUA_Achr9P20600_001 | Banana | nucleus, peroxisome, plasma membrane | 43.75 | 52.5 |
| TraesCS1A01G167100.1 | Wheat | cytosol, nucleus, peroxisome | 44.79 | 50.99 |
| HORVU1Hr1G044080.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 45.49 | 50.38 |
| TraesCS1B01G183500.1 | Wheat | cytosol, nucleus, plasma membrane | 46.53 | 50.38 |
| Bra027969.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 46.88 | 50.19 |
| TraesCS1D01G173800.1 | Wheat | cytosol, nucleus, plasma membrane | 46.18 | 50.0 |
| Zm00001d013947_P001 | Maize | cytosol | 40.97 | 44.53 |
| Zm00001d032620_P001 | Maize | cytosol | 42.01 | 44.16 |
| KXG38271 | Sorghum | cytosol, nucleus, vacuole | 41.67 | 43.48 |
| GSMUA_Achr1P17720_001 | Banana | plasma membrane | 40.62 | 43.01 |
| EES13101 | Sorghum | cytosol | 33.68 | 39.27 |
| OQU85155 | Sorghum | extracellular, plasma membrane | 26.04 | 38.27 |
| Os04t0677300-01 | Rice | plastid | 33.68 | 38.04 |
| TraesCS2D01G561400.1 | Wheat | peroxisome | 33.33 | 37.94 |
| Zm00001d001832_P001 | Maize | plastid | 32.99 | 37.85 |
| HORVU2Hr1G119500.1 | Barley | peroxisome | 32.99 | 37.7 |
| TraesCS2A01G593300.1 | Wheat | peroxisome | 32.99 | 37.55 |
| TraesCS2B01G591000.1 | Wheat | peroxisome | 32.64 | 37.01 |
| TraesCS4A01G217000.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome, plastid | 28.47 | 36.28 |
| TraesCS4A01G216800.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 27.78 | 36.2 |
| TraesCS4B01G095400.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 28.47 | 35.34 |
| TraesCS4B01G095300.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 27.43 | 34.96 |
| TraesCS4D01G092200.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 27.08 | 34.67 |
| TraesCS4D01G091900.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 27.08 | 34.51 |
| HORVU4Hr1G018760.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 27.78 | 34.19 |
| VIT_06s0009g01620.t01 | Wine grape | plasma membrane, plastid | 31.6 | 34.08 |
| OQU90204 | Sorghum | mitochondrion, plastid | 24.65 | 32.57 |
| EES06862 | Sorghum | peroxisome | 25.69 | 31.36 |
| Os02t0507900-00 | Rice | cytosol | 26.74 | 30.8 |
| HORVU4Hr1G018720.1 | Barley | cytosol | 14.24 | 26.28 |
| OQU88420 | Sorghum | mitochondrion | 25.69 | 21.2 |
Protein Annotations
| EntrezGene:100249528 | wikigene:100249528 | MapMan:35.1 | ProteinID:CCB50526 | ProteinID:CCB50526.1 | UniProt:F6HE80 |
| EMBL:FN595750 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:LEA_2 | EntrezGene:LOC100249528 |
| wikigene:LOC100249528 | PFAM:PF03168 | PANTHER:PTHR31852 | PANTHER:PTHR31852:SF48 | TMHMM:TMhelix | UniParc:UPI000210877C |
| ArrayExpress:VIT_16s0039g00340 | EnsemblPlantsGene:VIT_16s0039g00340 | EnsemblPlants:VIT_16s0039g00340.t01 | RefSeq:XP_002263732 | RefSeq:XP_002263732.1 | RefSeq:XP_002263732.2 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr16:+:175127..175993
Molecular Weight (calculated)
32464.2 Da
IEP (calculated)
10.021
GRAVY (calculated)
-0.102
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSTHYQSLL DEVHSIPKLR KGATTAFHCI RVTAGIDMLM ADHQKIHPVV DPEAPPTEPL VPRGSFRSEK GDPFQHPPDP PLQRTIPVIH SKPPKRSCCC
101: KCMCWTISLL VLLLVIVGAI AGVLYLVFQP KLPKYSVDSL RITDFQLNYD MTLYAKFDMK IKANNPNKKI GIYYEKGGKL SVWYTNTKLC HGSLPKFYQG
201: HQNTTVLNVV LTGQTQYGST LMTALQEQQQ KRRIPLDLKV DVPVAIKLGK LKLKKVRFLV ECLLVVDSLS ANNLISIRAS DCRFRLKL
101: KCMCWTISLL VLLLVIVGAI AGVLYLVFQP KLPKYSVDSL RITDFQLNYD MTLYAKFDMK IKANNPNKKI GIYYEKGGKL SVWYTNTKLC HGSLPKFYQG
201: HQNTTVLNVV LTGQTQYGST LMTALQEQQQ KRRIPLDLKV DVPVAIKLGK LKLKKVRFLV ECLLVVDSLS ANNLISIRAS DCRFRLKL
001: MSDHQKIHPV SDPEAPPHPT APLVPRGSSR SEHGDPTKTQ QAAPLDPPRE KKGSRSCWCR CVCYTLLVLF LLIVIVGAIV GILYLVFRPK FPDYNIDRLQ
101: LTRFQLNQDL SLSTAFNVTI TAKNPNEKIG IYYEDGSKIS VLYMQTRISN GSLPKFYQGH ENTTIILVEM TGFTQNATSL MTTLQEQQRL TGSIPLRIRV
201: TQPVRIKLGK LKLMKVRFLV RCGVSVDSLA ANSVIRVRSS NCKYRFRL
101: LTRFQLNQDL SLSTAFNVTI TAKNPNEKIG IYYEDGSKIS VLYMQTRISN GSLPKFYQGH ENTTIILVEM TGFTQNATSL MTTLQEQQRL TGSIPLRIRV
201: TQPVRIKLGK LKLMKVRFLV RCGVSVDSLA ANSVIRVRSS NCKYRFRL
Arabidopsis Description
NHL25NHL25 [Source:UniProtKB/TrEMBL;Acc:A0A178UFH9]
SUBAcon: [peroxisome,nucleus,plasma membrane]
SUBAcon: [peroxisome,nucleus,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.