Factsheet for VIT_06s0009g01620.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14686	Soybean	plastid	57.68	56.41
PGSC0003DMT400022474	Potato	plastid	56.55	55.93
CDY48196	Canola	cytosol, peroxisome, plasma membrane	54.31	55.77
Bra034321.1-P	Field mustard	cytosol, peroxisome, plasma membrane	53.93	55.38
CDX77067	Canola	cytosol, peroxisome, plasma membrane, plastid	53.93	55.38
KRH73453	Soybean	plastid	56.55	55.31
Solyc01g009160.2.1	Tomato	plastid	53.93	54.55
PGSC0003DMT400005086	Potato	plastid	53.56	54.37
AT2G27080.1	Thale cress	cytosol, peroxisome, plasma membrane	52.43	53.85
Bra000526.1-P	Field mustard	cytosol, peroxisome, plasma membrane	50.94	53.12
CDY38543	Canola	cytosol, peroxisome, plasma membrane	50.19	52.34
CDX83252	Canola	cytosol, peroxisome, plasma membrane	49.81	51.95
GSMUA_Achr11P...	Banana	cytosol, peroxisome, vacuole	46.07	45.9
GSMUA_Achr3P03620_001	Banana	cytosol, peroxisome, vacuole	44.57	45.08
Os12t0127200-01	Rice	extracellular, plasma membrane, vacuole	41.95	40.73
Os11t0130400-01	Rice	extracellular, peroxisome, vacuole	41.57	40.22
VIT_04s0069g01010.t01	Wine grape	plasma membrane	35.96	38.25
AT5G21130.1	Thale cress	cytosol	40.07	38.08
Zm00001d005010_P001	Maize	plastid	40.07	37.68
TraesCS5D01G151200.1	Wheat	cytosol, extracellular, plasma membrane	39.7	37.19
TraesCS5A01G141200.1	Wheat	cytosol, extracellular, peroxisome	38.95	36.62
OQU87732	Sorghum	cytosol	40.45	36.61
TraesCS5B01G139500.1	Wheat	cytosol, extracellular, peroxisome	38.2	36.04
CDY09101	Canola	cytosol	39.33	35.84
Bra020148.1-P	Field mustard	cytosol	38.95	35.49
TraesCS2A01G489300.1	Wheat	cytosol, extracellular, plasma membrane	35.21	35.47
TraesCS4D01G124700.1	Wheat	cytosol, extracellular, plasma membrane	36.33	35.4
TraesCSU01G191800.1	Wheat	cytosol, extracellular, plasma membrane	35.96	35.29
TraesCSU01G059700.1	Wheat	cytosol, extracellular, plasma membrane	35.96	35.29
HORVU0Hr1G010640.1	Barley	cytosol, peroxisome	40.07	34.97
TraesCS2A01G489400.1	Wheat	cytosol, extracellular, plasma membrane	34.83	34.83
Bra020147.1-P	Field mustard	cytosol	39.33	34.65
Zm00001d043128_P001	Maize	cytosol	37.83	34.12
CDY09100	Canola	cytosol	38.2	33.66
TraesCS4B01G128000.1	Wheat	cytosol, extracellular, plasma membrane	34.46	33.58
TraesCS3A01G336800.1	Wheat	cytosol	36.7	33.45
EES15581	Sorghum	cytosol, mitochondrion, peroxisome	37.83	33.11
CDX88825	Canola	cytosol	37.45	33.11
Bra006594.1-P	Field mustard	nucleus	37.45	33.11
CDX70963	Canola	cytosol	37.08	32.78
TraesCS3D01G329800.1	Wheat	cytosol	37.45	32.57
HORVU4Hr1G026770.2	Barley	cytosol, plasma membrane	36.33	32.12
VIT_16s0039g00340.t01	Wine grape	cytosol	34.08	31.6
Os01t0812100-01	Rice	cytosol, mitochondrion, peroxisome	40.45	31.12
TraesCS1B01G251100.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	28.84	30.68
TraesCS3B01G367900.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	36.7	29.7
EES09185	Sorghum	plastid	41.2	27.78
HORVU3Hr1G079540.2	Barley	plastid	37.83	25.63
HORVU5Hr1G058740.3	Barley	cytosol, plastid	15.73	24.85
Zm00001d028765_P001	Maize	plastid	26.97	23.08
HORVU6Hr1G013910.1	Barley	mitochondrion	28.09	20.0

Protein Annotations

EntrezGene:100242686	wikigene:100242686	MapMan:35.1	ProteinID:CBI24356	ProteinID:CBI24356.3	UniProt:D7T1H6
EMBL:FN595504	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020
GO:GO:0016021	InterPro:LEA_2	EntrezGene:LOC100242686	wikigene:LOC100242686	PFAM:PF03168	PANTHER:PTHR31852
PANTHER:PTHR31852:SF0	TIGR:TC63609	TMHMM:TMhelix	UniParc:UPI00015CA21D	ArrayExpress:VIT_06s0009g01620	EnsemblPlantsGene:VIT_06s0009g01620
EnsemblPlants:VIT_06s0009g01620.t01	unigene:Vvi.15411	RefSeq:XP_002273485	RefSeq:XP_002273485.1	SEG:seg	:

Description

No Description!

Coordinates

chr6:-:13573148..13574097

Molecular Weight (calculated)

29309.3 Da

IEP (calculated)

9.346

GRAVY (calculated)

-0.140

Length

267 amino acids

Sequence
(BLAST)

001: MADRVHPKAS SPDATSPRPP QSPSNSNPPT PENPVPPAGT YVIQIPKDQI FRHPPPENAR RYQKYSGRKP RRSGCCCCLC WFLGLAALLI FLLAIAAGIF
101: YLVIRPKALS YSVEDISITG FNVSSAAATA SISPEFDVTV RADNPNKKIS IYYEEDSSVK VYYSDVDLCN GVLPVFYQPP KNVTVFQTAL NGSGVVLTSG
201: MKETLVNQQR EGNIPLKLKL KAPVKIRVGS VKTWTITVKV SCDLTVDKLT AESKIVSKDC DFSVRLW

Best Arabidopsis Sequence Match ( AT2G27080.1 )
(BLAST)

001: MAERVYPADS PPQSGQFSGN FSSGEFPKKP APPPSTYVIQ VPKDQIYRIP PPENAHRFEQ LSRKKTNRSN CRCCFCSFLA AVFILIVLAG ISFAVLYLIY
101: RPEAPKYSIE GFSVSGINLN STSPISPSFN VTVRSRNGNG KIGVYYEKES SVDVYYNDVD ISNGVMPVFY QPAKNVTVVK LVLSGSKIQL TSGMRKEMRN
201: EVSKKTVPFK LKIKAPVKIK FGSVKTWTMI VNVDCDVTVD KLTAPSRIVS RKCSHDVDLW

Arabidopsis Description

NHL13NDR1/HIN1-like protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD2]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.