Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 2
- golgi 1
- plasma membrane 2
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G128000.1 | Wheat | cytosol, extracellular, plasma membrane | 95.62 | 95.62 |
| TraesCS2A01G489300.1 | Wheat | cytosol, extracellular, plasma membrane | 92.34 | 95.47 |
| TraesCSU01G191800.1 | Wheat | cytosol, extracellular, plasma membrane | 93.8 | 94.49 |
| TraesCSU01G059700.1 | Wheat | cytosol, extracellular, plasma membrane | 93.8 | 94.49 |
| TraesCS2A01G489400.1 | Wheat | cytosol, extracellular, plasma membrane | 91.24 | 93.63 |
| HORVU4Hr1G026770.2 | Barley | cytosol, plasma membrane | 94.16 | 85.43 |
| Os12t0127200-01 | Rice | extracellular, plasma membrane, vacuole | 68.98 | 68.73 |
| Os11t0130400-01 | Rice | extracellular, peroxisome, vacuole | 68.61 | 68.12 |
| Zm00001d005010_P001 | Maize | plastid | 66.42 | 64.08 |
| TraesCS5D01G151200.1 | Wheat | cytosol, extracellular, plasma membrane | 66.06 | 63.51 |
| EES15581 | Sorghum | cytosol, mitochondrion, peroxisome | 65.69 | 59.02 |
| EES09185 | Sorghum | plastid | 66.06 | 45.71 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, vacuole | 40.51 | 41.42 |
| TraesCS3D01G329800.1 | Wheat | cytosol | 44.53 | 39.74 |
| GSMUA_Achr3P03620_001 | Banana | cytosol, peroxisome, vacuole | 35.77 | 37.12 |
| Bra034321.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 34.67 | 36.54 |
| CDY48196 | Canola | cytosol, peroxisome, plasma membrane | 34.67 | 36.54 |
| VIT_06s0009g01620.t01 | Wine grape | plasma membrane, plastid | 35.4 | 36.33 |
| KRH14686 | Soybean | plastid | 36.13 | 36.26 |
| CDX77067 | Canola | cytosol, peroxisome, plasma membrane, plastid | 33.94 | 35.77 |
| TraesCS1D01G173800.1 | Wheat | cytosol, nucleus, plasma membrane | 34.31 | 35.34 |
| PGSC0003DMT400022474 | Potato | plastid | 34.67 | 35.19 |
| KRH73453 | Soybean | plastid | 35.04 | 35.16 |
| PGSC0003DMT400005086 | Potato | plastid | 33.58 | 34.98 |
| CDX83252 | Canola | cytosol, peroxisome, plasma membrane | 32.48 | 34.77 |
| Bra000526.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 32.12 | 34.38 |
| CDY38543 | Canola | cytosol, peroxisome, plasma membrane | 31.75 | 33.98 |
| AT2G27080.1 | Thale cress | cytosol, peroxisome, plasma membrane | 31.39 | 33.08 |
| TraesCS2D01G561400.1 | Wheat | peroxisome | 29.93 | 32.41 |
| Solyc01g009160.2.1 | Tomato | plastid | 31.02 | 32.2 |
| CDY09101 | Canola | cytosol | 33.58 | 31.4 |
| Bra020148.1-P | Field mustard | cytosol | 33.21 | 31.06 |
| AT5G21130.1 | Thale cress | cytosol | 31.75 | 30.96 |
| CDX88825 | Canola | cytosol | 33.94 | 30.79 |
| CDY09100 | Canola | cytosol | 33.94 | 30.69 |
| Bra020147.1-P | Field mustard | cytosol | 33.94 | 30.69 |
| Bra006594.1-P | Field mustard | nucleus | 33.58 | 30.46 |
| CDX70963 | Canola | cytosol | 32.85 | 29.8 |
| TraesCS4D01G091900.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 23.72 | 28.76 |
| TraesCS5D01G176000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 21.9 | 28.71 |
| TraesCS4D01G092200.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 22.99 | 28.0 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G124700.1 | EnsemblPlantsGene:TraesCS4D01G124700 | InterPro:LEA_2 | PANTHER:PTHR31852 | PANTHER:PTHR31852:SF42 | PFAM:PF03168 |
| SEG:seg | TMHMM:TMhelix | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr4D:-:109072511..109073335
Molecular Weight (calculated)
29390.6 Da
IEP (calculated)
10.659
GRAVY (calculated)
0.030
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MADRVHPAPL LPLSTPPAPP TDNSDAAAET APLRSTIAAP APAPGASYIV HVPKDQVLRV PPPDRARRYR KLAARPARRR MLRRACCGAC CALLLLLVLA
101: AAFVGAVYLV FRPRAPSFSV TSLSVAGLLD ASPAQLDAAV RADNGANKKV GVDYRGGGEV SVSYSGFLLA TGRWPAFYQA PRNVTLISMP LTGRDGLALT
201: DDQRARLAEQ AAAGAVPLTV EARVPVRVRL GKVLRTWTVD VWARCEVTVD RIDGETTAAN RGCTVKAKPL WWWW
101: AAFVGAVYLV FRPRAPSFSV TSLSVAGLLD ASPAQLDAAV RADNGANKKV GVDYRGGGEV SVSYSGFLLA TGRWPAFYQA PRNVTLISMP LTGRDGLALT
201: DDQRARLAEQ AAAGAVPLTV EARVPVRVRL GKVLRTWTVD VWARCEVTVD RIDGETTAAN RGCTVKAKPL WWWW
001: MAERVYPADS PPQSGQFSGN FSSGEFPKKP APPPSTYVIQ VPKDQIYRIP PPENAHRFEQ LSRKKTNRSN CRCCFCSFLA AVFILIVLAG ISFAVLYLIY
101: RPEAPKYSIE GFSVSGINLN STSPISPSFN VTVRSRNGNG KIGVYYEKES SVDVYYNDVD ISNGVMPVFY QPAKNVTVVK LVLSGSKIQL TSGMRKEMRN
201: EVSKKTVPFK LKIKAPVKIK FGSVKTWTMI VNVDCDVTVD KLTAPSRIVS RKCSHDVDLW
101: RPEAPKYSIE GFSVSGINLN STSPISPSFN VTVRSRNGNG KIGVYYEKES SVDVYYNDVD ISNGVMPVFY QPAKNVTVVK LVLSGSKIQL TSGMRKEMRN
201: EVSKKTVPFK LKIKAPVKIK FGSVKTWTMI VNVDCDVTVD KLTAPSRIVS RKCSHDVDLW
Arabidopsis Description
NHL13NDR1/HIN1-like protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD2]
SUBAcon: [cytosol,plasma membrane,peroxisome]
SUBAcon: [cytosol,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.