Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 2
- golgi 1
- plasma membrane 2
- endoplasmic reticulum 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G141200.1 | Wheat | cytosol, extracellular, peroxisome | 96.84 | 97.18 |
| TraesCS5B01G139500.1 | Wheat | cytosol, extracellular, peroxisome | 94.39 | 95.05 |
| HORVU0Hr1G010640.1 | Barley | cytosol, peroxisome | 90.88 | 84.64 |
| Os12t0127200-01 | Rice | extracellular, plasma membrane, vacuole | 72.98 | 75.64 |
| Os11t0130400-01 | Rice | extracellular, peroxisome, vacuole | 72.63 | 75.0 |
| TraesCS4D01G124700.1 | Wheat | cytosol, extracellular, plasma membrane | 63.51 | 66.06 |
| Zm00001d005010_P001 | Maize | plastid | 64.56 | 64.79 |
| EES15581 | Sorghum | cytosol, mitochondrion, peroxisome | 65.61 | 61.31 |
| EES09185 | Sorghum | plastid | 64.91 | 46.72 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, vacuole | 39.3 | 41.79 |
| TraesCS3D01G329800.1 | Wheat | cytosol | 44.21 | 41.04 |
| KRH14686 | Soybean | plastid | 38.6 | 40.29 |
| GSMUA_Achr3P03620_001 | Banana | cytosol, peroxisome, vacuole | 36.84 | 39.77 |
| VIT_06s0009g01620.t01 | Wine grape | plasma membrane, plastid | 37.19 | 39.7 |
| PGSC0003DMT400022474 | Potato | plastid | 37.19 | 39.26 |
| KRH73453 | Soybean | plastid | 37.54 | 39.19 |
| PGSC0003DMT400005086 | Potato | plastid | 35.09 | 38.02 |
| CDY48196 | Canola | cytosol, peroxisome, plasma membrane | 34.39 | 37.69 |
| Bra034321.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 34.39 | 37.69 |
| Solyc01g009160.2.1 | Tomato | plastid | 34.39 | 37.12 |
| CDX77067 | Canola | cytosol, peroxisome, plasma membrane, plastid | 32.98 | 36.15 |
| Bra000526.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 31.23 | 34.77 |
| CDX83252 | Canola | cytosol, peroxisome, plasma membrane | 31.23 | 34.77 |
| CDY38543 | Canola | cytosol, peroxisome, plasma membrane | 30.88 | 34.38 |
| AT2G27080.1 | Thale cress | cytosol, peroxisome, plasma membrane | 31.23 | 34.23 |
| TraesCS2D01G561400.1 | Wheat | peroxisome | 28.77 | 32.41 |
| TraesCS1D01G173800.1 | Wheat | cytosol, nucleus, plasma membrane | 29.82 | 31.95 |
| CDY09100 | Canola | cytosol | 33.33 | 31.35 |
| CDY09101 | Canola | cytosol | 31.93 | 31.06 |
| CDX88825 | Canola | cytosol | 32.63 | 30.79 |
| Bra020148.1-P | Field mustard | cytosol | 31.58 | 30.72 |
| AT5G21130.1 | Thale cress | cytosol | 30.18 | 30.61 |
| Bra020147.1-P | Field mustard | cytosol | 32.28 | 30.36 |
| Bra006594.1-P | Field mustard | nucleus | 31.93 | 30.13 |
| CDX70963 | Canola | cytosol | 31.23 | 29.47 |
| TraesCS4D01G091900.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 21.75 | 27.43 |
| TraesCS4D01G092200.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 20.35 | 25.78 |
| TraesCS5D01G176000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 18.25 | 24.88 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G151200.1 | EnsemblPlantsGene:TraesCS5D01G151200 | InterPro:LEA_2 | PANTHER:PTHR31852 | PANTHER:PTHR31852:SF42 | PFAM:PF03168 |
| SEG:seg | TMHMM:TMhelix | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr5D:-:240502209..240503066
Molecular Weight (calculated)
30855.2 Da
IEP (calculated)
11.115
GRAVY (calculated)
-0.115
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MADRVHPMQS PPHPASPLPP PDQEDAAAAT AATETTPLHP TLYGPPAPPP GTYIVQIPKD QVLRVPPPDR ASRYKSLAER PVRRRRLRRA FFGTCGAVLF
101: LALAAAVFVG TVYLVFRPRA PAFSVASLSI RGLDVAALPP SSLSPELDVA LRADNGANRK VGVDYRGAGE VAVSYSGARL AAGQWPAFHQ APRNVTVFST
201: TLRGTGVSFS DEQRKQLAAE QAARAVPLTV EARVPVRLRF GKVLRTWTVD VKATCQVTVD KLAGEAAAAN RGCRVKVRPF LWWWW
101: LALAAAVFVG TVYLVFRPRA PAFSVASLSI RGLDVAALPP SSLSPELDVA LRADNGANRK VGVDYRGAGE VAVSYSGARL AAGQWPAFHQ APRNVTVFST
201: TLRGTGVSFS DEQRKQLAAE QAARAVPLTV EARVPVRLRF GKVLRTWTVD VKATCQVTVD KLAGEAAAAN RGCRVKVRPF LWWWW
001: MAERVYPADS PPQSGQFSGN FSSGEFPKKP APPPSTYVIQ VPKDQIYRIP PPENAHRFEQ LSRKKTNRSN CRCCFCSFLA AVFILIVLAG ISFAVLYLIY
101: RPEAPKYSIE GFSVSGINLN STSPISPSFN VTVRSRNGNG KIGVYYEKES SVDVYYNDVD ISNGVMPVFY QPAKNVTVVK LVLSGSKIQL TSGMRKEMRN
201: EVSKKTVPFK LKIKAPVKIK FGSVKTWTMI VNVDCDVTVD KLTAPSRIVS RKCSHDVDLW
101: RPEAPKYSIE GFSVSGINLN STSPISPSFN VTVRSRNGNG KIGVYYEKES SVDVYYNDVD ISNGVMPVFY QPAKNVTVVK LVLSGSKIQL TSGMRKEMRN
201: EVSKKTVPFK LKIKAPVKIK FGSVKTWTMI VNVDCDVTVD KLTAPSRIVS RKCSHDVDLW
Arabidopsis Description
NHL13NDR1/HIN1-like protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD2]
SUBAcon: [cytosol,plasma membrane,peroxisome]
SUBAcon: [cytosol,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.