CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000526.1-P	Field mustard	cytosol, peroxisome, plasma membrane	96.48	96.48
CDY38543	Canola	cytosol, peroxisome, plasma membrane	93.75	93.75
CDX77067	Canola	cytosol, peroxisome, plasma membrane, plastid	82.81	81.54
CDY48196	Canola	cytosol, peroxisome, plasma membrane	81.64	80.38
AT2G27080.1	Thale cress	cytosol, peroxisome, plasma membrane	78.91	77.69
KRH14686	Soybean	plastid	54.3	50.92
VIT_06s0009g01620.t01	Wine grape	plasma membrane, plastid	51.95	49.81
KRH73453	Soybean	plastid	52.73	49.45
PGSC0003DMT400005086	Potato	plastid	50.0	48.67
PGSC0003DMT400022474	Potato	plastid	49.22	46.67
Solyc01g009160.2.1	Tomato	plastid	45.31	43.94
GSMUA_Achr11P...	Banana	cytosol, peroxisome, vacuole	39.06	37.31
GSMUA_Achr3P03620_001	Banana	cytosol, peroxisome, vacuole	38.28	37.12
CDX70963	Canola	cytosol	43.36	36.76
CDX88825	Canola	cytosol	42.58	36.09
OQU87732	Sorghum	cytosol	40.62	35.25
CDY09101	Canola	cytosol	39.84	34.81
Os12t0127200-01	Rice	extracellular, plasma membrane, vacuole	36.33	33.82
CDY09100	Canola	cytosol	39.84	33.66
Os11t0130400-01	Rice	extracellular, peroxisome, vacuole	35.55	32.97
TraesCS2A01G489300.1	Wheat	cytosol, extracellular, plasma membrane	33.98	32.83
TraesCS3A01G336800.1	Wheat	cytosol	37.5	32.76
TraesCS2A01G489400.1	Wheat	cytosol, extracellular, plasma membrane	33.98	32.58
TraesCS4D01G124700.1	Wheat	cytosol, extracellular, plasma membrane	34.77	32.48
TraesCSU01G191800.1	Wheat	cytosol, extracellular, plasma membrane	34.38	32.35
TraesCSU01G059700.1	Wheat	cytosol, extracellular, plasma membrane	34.38	32.35
CDY16419	Canola	plastid	31.25	32.26
CDY72163	Canola	plastid	31.25	32.26
TraesCS3D01G329800.1	Wheat	cytosol	38.67	32.25
TraesCS1B01G251100.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	30.86	31.47
Zm00001d043128_P001	Maize	cytosol	36.33	31.42
TraesCS4B01G128000.1	Wheat	cytosol, extracellular, plasma membrane	33.59	31.39
TraesCS5D01G151200.1	Wheat	cytosol, extracellular, plasma membrane	34.77	31.23
TraesCS5A01G141200.1	Wheat	cytosol, extracellular, peroxisome	34.38	30.99
Zm00001d005010_P001	Maize	plastid	33.59	30.28
TraesCS5B01G139500.1	Wheat	cytosol, extracellular, peroxisome	32.81	29.68
HORVU4Hr1G026770.2	Barley	cytosol, plasma membrane	34.77	29.47
EES15581	Sorghum	cytosol, mitochondrion, peroxisome	34.77	29.18
TraesCS3B01G367900.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	37.5	29.09
CDX74604	Canola	cytosol, nucleus, plasma membrane	28.91	29.02
CDY53530	Canola	cytosol, nucleus, plasma membrane	28.91	29.02
HORVU0Hr1G010640.1	Barley	cytosol, peroxisome	34.38	28.76
Os01t0812100-01	Rice	cytosol, mitochondrion, peroxisome	38.67	28.53
HORVU5Hr1G058740.3	Barley	cytosol, plastid	17.58	26.63
HORVU3Hr1G079540.2	Barley	plastid	39.06	25.38
CDY26995	Canola	cytosol	28.52	23.78
EES09185	Sorghum	plastid	36.33	23.48
Zm00001d028765_P001	Maize	plastid	25.39	20.83
HORVU6Hr1G013910.1	Barley	mitochondrion	29.3	20.0
CDY38564	Canola	plasma membrane	29.3	11.83

Protein Annotations

EnsemblPlants:CDX83252	EnsemblPlantsGene:GSBRNA2T00138802001	GO:A0A078D2B2	InterPro:LEA_2	PANTHER:PTHR31852	PANTHER:PTHR31852:SF0
PFAM:PF03168	ProteinID:CDX83252	ProteinID:CDX83252.1	TMHMM:TMhelix	UniParc:UPI0004EDB056	MapMan:35.1

Description

BnaA03g22540D

Coordinates

chrLK031832:+:662722..663492

Molecular Weight (calculated)

28490.5 Da

IEP (calculated)

10.041

GRAVY (calculated)

-0.106

Length

256 amino acids

Sequence
(BLAST)

001: MAERVYPADS PPVSGQFSDN FSSGEFPRKP ATYVIQVPKD QIYHVPPPEN AHRFQHLSQK KVHRSRCRSC FCSFLAAIFI LVVLAGISLA VIYLVFRPEA
101: PKYSVEDFSV SGINLLSPSP NSPKFNVTVM SRNGNGQIGI YYEKGSTVDV FYKDVDLCHG ALPVFYQSAK NVTVVKTVLT GSKIQLTSGI RKEMRNDLSR
201: KSFPFKLKTR APVKIKIGSV KTWTITVNVN CDVTVDKLAA PTRIVSSKCS HDVDLW

Best Arabidopsis Sequence Match ( AT2G27080.1 )
(BLAST)

001: MAERVYPADS PPQSGQFSGN FSSGEFPKKP APPPSTYVIQ VPKDQIYRIP PPENAHRFEQ LSRKKTNRSN CRCCFCSFLA AVFILIVLAG ISFAVLYLIY
101: RPEAPKYSIE GFSVSGINLN STSPISPSFN VTVRSRNGNG KIGVYYEKES SVDVYYNDVD ISNGVMPVFY QPAKNVTVVK LVLSGSKIQL TSGMRKEMRN
201: EVSKKTVPFK LKIKAPVKIK FGSVKTWTMI VNVDCDVTVD KLTAPSRIVS RKCSHDVDLW

Arabidopsis Description

NHL13NDR1/HIN1-like protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD2]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.