Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77067 | Canola | cytosol, peroxisome, plasma membrane, plastid | 83.08 | 83.08 |
| CDY48196 | Canola | cytosol, peroxisome, plasma membrane | 82.31 | 82.31 |
| Bra034321.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 81.92 | 81.92 |
| Bra000526.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 79.62 | 80.86 |
| CDY38543 | Canola | cytosol, peroxisome, plasma membrane | 79.23 | 80.47 |
| CDX83252 | Canola | cytosol, peroxisome, plasma membrane | 77.69 | 78.91 |
| VIT_06s0009g01620.t01 | Wine grape | plasma membrane, plastid | 53.85 | 52.43 |
| PGSC0003DMT400005086 | Potato | plastid | 52.69 | 52.09 |
| KRH14686 | Soybean | plastid | 53.08 | 50.55 |
| PGSC0003DMT400022474 | Potato | plastid | 51.92 | 50.0 |
| Solyc01g009160.2.1 | Tomato | plastid | 50.38 | 49.62 |
| KRH73453 | Soybean | plastid | 51.54 | 49.08 |
| AT5G21130.1 | Thale cress | cytosol | 48.08 | 44.48 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, vacuole | 39.62 | 38.43 |
| GSMUA_Achr3P03620_001 | Banana | cytosol, peroxisome, vacuole | 37.31 | 36.74 |
| OQU87732 | Sorghum | cytosol | 40.0 | 35.25 |
| TraesCS3A01G336800.1 | Wheat | cytosol | 36.92 | 32.76 |
| Zm00001d005010_P001 | Maize | plastid | 35.77 | 32.75 |
| Os12t0127200-01 | Rice | extracellular, plasma membrane, vacuole | 34.62 | 32.73 |
| Os11t0130400-01 | Rice | extracellular, peroxisome, vacuole | 34.23 | 32.25 |
| TraesCS2A01G489400.1 | Wheat | cytosol, extracellular, plasma membrane | 32.69 | 31.84 |
| TraesCS2A01G489300.1 | Wheat | cytosol, extracellular, plasma membrane | 32.31 | 31.7 |
| TraesCS4D01G124700.1 | Wheat | cytosol, extracellular, plasma membrane | 33.08 | 31.39 |
| AT1G65690.1 | Thale cress | plasma membrane, plastid | 30.38 | 31.35 |
| TraesCS3D01G329800.1 | Wheat | cytosol | 36.92 | 31.27 |
| TraesCSU01G059700.1 | Wheat | cytosol, extracellular, plasma membrane | 32.69 | 31.25 |
| TraesCSU01G191800.1 | Wheat | cytosol, extracellular, plasma membrane | 32.69 | 31.25 |
| TraesCS5D01G151200.1 | Wheat | cytosol, extracellular, plasma membrane | 34.23 | 31.23 |
| Zm00001d043128_P001 | Maize | cytosol | 35.38 | 31.08 |
| TraesCS5A01G141200.1 | Wheat | cytosol, extracellular, peroxisome | 33.85 | 30.99 |
| EES15581 | Sorghum | cytosol, mitochondrion, peroxisome | 35.77 | 30.49 |
| TraesCS1B01G251100.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 29.23 | 30.28 |
| AT5G36970.1 | Thale cress | nucleus, peroxisome, plasma membrane | 28.85 | 30.24 |
| TraesCS5B01G139500.1 | Wheat | cytosol, extracellular, peroxisome | 32.69 | 30.04 |
| TraesCS4B01G128000.1 | Wheat | cytosol, extracellular, plasma membrane | 31.54 | 29.93 |
| HORVU0Hr1G010640.1 | Barley | cytosol, peroxisome | 33.85 | 28.76 |
| TraesCS3B01G367900.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome, plastid | 36.15 | 28.48 |
| AT1G54540.1 | Thale cress | cytosol, peroxisome, plasma membrane, plastid | 26.15 | 28.45 |
| HORVU4Hr1G026770.2 | Barley | cytosol, plasma membrane | 32.69 | 28.15 |
| Os01t0812100-01 | Rice | cytosol, mitochondrion, peroxisome | 37.31 | 27.95 |
| HORVU5Hr1G058740.3 | Barley | cytosol, plastid | 17.31 | 26.63 |
| HORVU3Hr1G079540.2 | Barley | plastid | 38.46 | 25.38 |
| EES09185 | Sorghum | plastid | 37.31 | 24.49 |
| HORVU6Hr1G013910.1 | Barley | mitochondrion | 29.23 | 20.27 |
| Zm00001d028765_P001 | Maize | plastid | 24.23 | 20.19 |
Protein Annotations
| MapMan:35.1 | EntrezGene:817250 | ProteinID:AAC77866.1 | ProteinID:AEC07933.1 | ProteinID:AEC07934.1 | EMBL:AF370591 |
| EMBL:AK227800 | ArrayExpress:AT2G27080 | EnsemblPlantsGene:AT2G27080 | RefSeq:AT2G27080 | TAIR:AT2G27080 | RefSeq:AT2G27080-TAIR-G |
| EnsemblPlants:AT2G27080.1 | TAIR:AT2G27080.1 | EMBL:AY052291 | EMBL:AY061921 | Unigene:At.68415 | GO:GO:0005575 |
| GO:GO:0005623 | GO:GO:0005886 | GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 | GO:GO:0009506 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0042742 | InterPro:LEA_2 |
| RefSeq:NP_565634.1 | RefSeq:NP_973540.1 | PFAM:PF03168 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001185 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR31852 | PANTHER:PTHR31852:SF0 | UniProt:Q9ZVD2 | TMHMM:TMhelix | UniParc:UPI00000A35DA |
| SEG:seg | : | : | : | : | : |
Description
NHL13NDR1/HIN1-like protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD2]
Coordinates
chr2:+:11566288..11567504
Molecular Weight (calculated)
28977.1 Da
IEP (calculated)
10.023
GRAVY (calculated)
-0.192
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MAERVYPADS PPQSGQFSGN FSSGEFPKKP APPPSTYVIQ VPKDQIYRIP PPENAHRFEQ LSRKKTNRSN CRCCFCSFLA AVFILIVLAG ISFAVLYLIY
101: RPEAPKYSIE GFSVSGINLN STSPISPSFN VTVRSRNGNG KIGVYYEKES SVDVYYNDVD ISNGVMPVFY QPAKNVTVVK LVLSGSKIQL TSGMRKEMRN
201: EVSKKTVPFK LKIKAPVKIK FGSVKTWTMI VNVDCDVTVD KLTAPSRIVS RKCSHDVDLW
101: RPEAPKYSIE GFSVSGINLN STSPISPSFN VTVRSRNGNG KIGVYYEKES SVDVYYNDVD ISNGVMPVFY QPAKNVTVVK LVLSGSKIQL TSGMRKEMRN
201: EVSKKTVPFK LKIKAPVKIK FGSVKTWTMI VNVDCDVTVD KLTAPSRIVS RKCSHDVDLW
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.