CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 1
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0127200-01	Rice	extracellular, plasma membrane, vacuole	65.57	72.73
Os11t0130400-01	Rice	extracellular, peroxisome, vacuole	65.25	72.1
TraesCS5A01G141200.1	Wheat	cytosol, extracellular, peroxisome	62.62	67.25
TraesCS5B01G139500.1	Wheat	cytosol, extracellular, peroxisome	62.3	67.14
TraesCS4D01G124700.1	Wheat	cytosol, extracellular, plasma membrane	59.02	65.69
TraesCS5D01G151200.1	Wheat	cytosol, extracellular, plasma membrane	61.31	65.61
TraesCSU01G191800.1	Wheat	cytosol, extracellular, plasma membrane	58.03	65.07
TraesCSU01G059700.1	Wheat	cytosol, extracellular, plasma membrane	58.03	65.07
TraesCS2A01G489300.1	Wheat	cytosol, extracellular, plasma membrane	56.07	64.53
TraesCS2A01G489400.1	Wheat	cytosol, extracellular, plasma membrane	55.74	63.67
TraesCS4B01G128000.1	Wheat	cytosol, extracellular, plasma membrane	57.05	63.5
HORVU0Hr1G010640.1	Barley	cytosol, peroxisome	61.64	61.44
HORVU4Hr1G026770.2	Barley	cytosol, plasma membrane	58.36	58.94
EES09185	Sorghum	plastid	64.59	49.75
GSMUA_Achr11P...	Banana	cytosol, peroxisome, vacuole	39.34	44.78
OQU87732	Sorghum	cytosol	40.33	41.69
GSMUA_Achr3P03620_001	Banana	cytosol, peroxisome, vacuole	34.43	39.77
VIT_06s0009g01620.t01	Wine grape	plasma membrane, plastid	33.11	37.83
KRH14686	Soybean	plastid	33.44	37.36
KRH73453	Soybean	plastid	33.44	37.36
PGSC0003DMT400022474	Potato	plastid	32.79	37.04
CDY48196	Canola	cytosol, peroxisome, plasma membrane	31.48	36.92
Bra034321.1-P	Field mustard	cytosol, peroxisome, plasma membrane	31.48	36.92
CDX77067	Canola	cytosol, peroxisome, plasma membrane, plastid	30.82	36.15
AT2G27080.1	Thale cress	cytosol, peroxisome, plasma membrane	30.49	35.77
PGSC0003DMT400005086	Potato	plastid	30.49	35.36
Solyc01g009160.2.1	Tomato	plastid	30.16	34.85
CDX83252	Canola	cytosol, peroxisome, plasma membrane	29.18	34.77
Bra000526.1-P	Field mustard	cytosol, peroxisome, plasma membrane	29.18	34.77
CDY38543	Canola	cytosol, peroxisome, plasma membrane	28.85	34.38
OQU85155	Sorghum	extracellular, plasma membrane	21.31	33.16
EES13101	Sorghum	cytosol	26.23	32.39
Bra020147.1-P	Field mustard	cytosol	31.48	31.68
CDY09100	Canola	cytosol	31.48	31.68
CDX88825	Canola	cytosol	30.82	31.13
CDY09101	Canola	cytosol	29.84	31.06
Bra006594.1-P	Field mustard	nucleus	30.49	30.79
Bra020148.1-P	Field mustard	cytosol	29.51	30.72
AT5G21130.1	Thale cress	cytosol	28.2	30.61
CDX70963	Canola	cytosol	29.84	30.13
KXG38271	Sorghum	cytosol, nucleus, vacuole	26.89	29.71
EER98613	Sorghum	endoplasmic reticulum, plasma membrane, plastid	19.67	28.85
OQU90204	Sorghum	mitochondrion, plastid	19.34	27.06
EES06862	Sorghum	peroxisome	19.02	24.58
OQU88420	Sorghum	mitochondrion	19.67	17.19

Protein Annotations

EnsemblPlants:EES15581	EnsemblPlantsGene:SORBI_3008G018600	EntrezGene:8071437	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:LEA_2	PANTHER:PTHR31852	PANTHER:PTHR31852:SF42	PFAM:PF03168	ProteinID:EES15581	ProteinID:EES15581.1
RefSeq:XP_002441743.1	SEG:seg	TMHMM:TMhelix	unigene:Sbi.19896	UniParc:UPI0001A8840E	UniProt:C5YQP2
MapMan:35.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:1517619..1519442

Molecular Weight (calculated)

32770.4 Da

IEP (calculated)

11.201

GRAVY (calculated)

-0.205

Length

305 amino acids

Sequence
(BLAST)

001: MADRVHPMPS PSSSPLPPPP GRRPPDHHHQ QPSVADDDPD PAAAAPATET TPLHPSFFHD DHPLALSPPP GTYIIQVPKD QVLRSPPPDR ARRYKKLSGR
101: PARRRRLRRA CCLACAALLA ILLAAAAFVG AVFLIFRPRP PSFSVPSLAV RGLDALASAS SPPLSPSLDA AVRADNGRNG KTGVEYRGGG DVAVSYAGER
201: LAAGTWPAFR QAPRNVTVVA VAMRGQGVRL TDAQRTQLAA DRAVAAVPLT VEATVPVRLR FGKVLRTWTV DVKARCEVAV DRLDGNAAVV NKGCSVRVKP
301: LWWWW

Best Arabidopsis Sequence Match ( AT2G27080.1 )
(BLAST)

001: MAERVYPADS PPQSGQFSGN FSSGEFPKKP APPPSTYVIQ VPKDQIYRIP PPENAHRFEQ LSRKKTNRSN CRCCFCSFLA AVFILIVLAG ISFAVLYLIY
101: RPEAPKYSIE GFSVSGINLN STSPISPSFN VTVRSRNGNG KIGVYYEKES SVDVYYNDVD ISNGVMPVFY QPAKNVTVVK LVLSGSKIQL TSGMRKEMRN
201: EVSKKTVPFK LKIKAPVKIK FGSVKTWTMI VNVDCDVTVD KLTAPSRIVS RKCSHDVDLW

Arabidopsis Description

NHL13NDR1/HIN1-like protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD2]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.