Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol, peroxisome
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 2
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G141200.1 | Wheat | cytosol, extracellular, peroxisome | 96.47 | 96.13 |
| TraesCS5D01G151200.1 | Wheat | cytosol, extracellular, plasma membrane | 95.05 | 94.39 |
| HORVU0Hr1G010640.1 | Barley | cytosol, peroxisome | 91.87 | 84.97 |
| Os12t0127200-01 | Rice | extracellular, plasma membrane, vacuole | 72.79 | 74.91 |
| Os11t0130400-01 | Rice | extracellular, peroxisome, vacuole | 72.79 | 74.64 |
| Zm00001d005010_P001 | Maize | plastid | 64.31 | 64.08 |
| TraesCS4B01G128000.1 | Wheat | cytosol, extracellular, plasma membrane | 61.48 | 63.5 |
| EES15581 | Sorghum | cytosol, mitochondrion, peroxisome | 67.14 | 62.3 |
| EES09185 | Sorghum | plastid | 65.37 | 46.72 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, vacuole | 39.22 | 41.42 |
| GSMUA_Achr3P03620_001 | Banana | cytosol, peroxisome, vacuole | 36.75 | 39.39 |
| KRH14686 | Soybean | plastid | 37.81 | 39.19 |
| TraesCS1B01G251100.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 34.28 | 38.65 |
| VIT_06s0009g01620.t01 | Wine grape | plasma membrane, plastid | 36.04 | 38.2 |
| KRH73453 | Soybean | plastid | 36.75 | 38.1 |
| TraesCS3B01G367900.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome, plastid | 44.17 | 37.88 |
| PGSC0003DMT400022474 | Potato | plastid | 36.04 | 37.78 |
| PGSC0003DMT400005086 | Potato | plastid | 33.92 | 36.5 |
| CDY48196 | Canola | cytosol, peroxisome, plasma membrane | 32.86 | 35.77 |
| Bra034321.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 32.86 | 35.77 |
| Solyc01g009160.2.1 | Tomato | plastid | 33.22 | 35.61 |
| CDX77067 | Canola | cytosol, peroxisome, plasma membrane, plastid | 31.45 | 34.23 |
| Bra000526.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 29.68 | 32.81 |
| CDX83252 | Canola | cytosol, peroxisome, plasma membrane | 29.68 | 32.81 |
| AT2G27080.1 | Thale cress | cytosol, peroxisome, plasma membrane | 30.04 | 32.69 |
| CDY38543 | Canola | cytosol, peroxisome, plasma membrane | 29.33 | 32.42 |
| TraesCS1B01G183500.1 | Wheat | cytosol, nucleus, plasma membrane | 30.04 | 31.95 |
| TraesCS2B01G591000.1 | Wheat | peroxisome | 28.27 | 31.5 |
| CDY09101 | Canola | cytosol | 31.8 | 30.72 |
| CDY09100 | Canola | cytosol | 32.86 | 30.69 |
| Bra020148.1-P | Field mustard | cytosol | 31.45 | 30.38 |
| CDX88825 | Canola | cytosol | 32.16 | 30.13 |
| Bra006594.1-P | Field mustard | nucleus | 31.8 | 29.8 |
| Bra020147.1-P | Field mustard | cytosol | 31.8 | 29.7 |
| AT5G21130.1 | Thale cress | cytosol | 29.33 | 29.54 |
| CDX70963 | Canola | cytosol | 30.39 | 28.48 |
| TraesCS4B01G095400.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 22.26 | 27.16 |
| TraesCS5B01G168700.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 18.37 | 24.88 |
| TraesCS4B01G095300.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 19.43 | 24.34 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G139500.1 | EnsemblPlantsGene:TraesCS5B01G139500 | InterPro:LEA_2 | PANTHER:PTHR31852 | PANTHER:PTHR31852:SF42 | PFAM:PF03168 |
| SEG:seg | TMHMM:TMhelix | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr5B:+:263220869..263221720
Molecular Weight (calculated)
30612.9 Da
IEP (calculated)
11.202
GRAVY (calculated)
-0.078
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MADRVHPMQS PPHPASPLPP PDQEDAAAAA AAATETTPLH PTFYGPPAPP PGTYIVQIPK DQVLRVPPSD RASRYKSLAE RPVRRRRLRR ACFGAFGAVL
101: FLALAAAVFV GAVYLVFRPR APAFSVASLS IRGLDVVAPS LSPELEVALR ADNGANRKVG VDYRGAGEVA VTYSGARLAA GQWPAFHQAP RNVTVLSTTL
201: RGTGVSFSDE QRKQLAAEQA ARAVPLTVEA RVPVRLRFGK VLRTWTVDVK ATCQVTVDRL AGEAAAANRG CRVKVRPFLW WWW
101: FLALAAAVFV GAVYLVFRPR APAFSVASLS IRGLDVVAPS LSPELEVALR ADNGANRKVG VDYRGAGEVA VTYSGARLAA GQWPAFHQAP RNVTVLSTTL
201: RGTGVSFSDE QRKQLAAEQA ARAVPLTVEA RVPVRLRFGK VLRTWTVDVK ATCQVTVDRL AGEAAAANRG CRVKVRPFLW WWW
001: MTVEKPQEMT GDTNSDGFLT NKDVHRIKHP SLDTNDSSSS RYSVDSQKSR IGPPPGTYVI KLPKDQIYRV PPPENAHRYE YLSRRKTNKS CCRRCLCYSL
101: SALLIIIVLA AIAFGFFYLV YQPHKPQFSV SGVSVTGINL TSSSPFSPVI RIKLRSQNVK GKLGLIYEKG NEADVFFNGT KLGNGEFTAF KQPAGNVTVI
201: VTVLKGSSVK LKSSSRKELT ESQKKGKVPF GLRIKAPVKF KVGSVTTWTM TITVDCKITV DKLTASATVK TENCETGLSL L
101: SALLIIIVLA AIAFGFFYLV YQPHKPQFSV SGVSVTGINL TSSSPFSPVI RIKLRSQNVK GKLGLIYEKG NEADVFFNGT KLGNGEFTAF KQPAGNVTVI
201: VTVLKGSSVK LKSSSRKELT ESQKKGKVPF GLRIKAPVKF KVGSVTTWTM TITVDCKITV DKLTASATVK TENCETGLSL L
Arabidopsis Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Source:UniProtKB/TrEMBL;Acc:Q84VP8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.