Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G141200.1 | Wheat | cytosol, extracellular, peroxisome | 85.29 | 91.9 |
| TraesCS5B01G139500.1 | Wheat | cytosol, extracellular, peroxisome | 84.97 | 91.87 |
| TraesCS5D01G151200.1 | Wheat | cytosol, extracellular, plasma membrane | 84.64 | 90.88 |
| Os12t0127200-01 | Rice | extracellular, plasma membrane, vacuole | 68.3 | 76.0 |
| Os11t0130400-01 | Rice | extracellular, peroxisome, vacuole | 68.3 | 75.72 |
| Zm00001d005010_P001 | Maize | plastid | 59.8 | 64.44 |
| EES15581 | Sorghum | cytosol, mitochondrion, peroxisome | 61.44 | 61.64 |
| HORVU4Hr1G026770.2 | Barley | cytosol, plasma membrane | 59.8 | 60.6 |
| EES09185 | Sorghum | plastid | 64.05 | 49.49 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, vacuole | 37.25 | 42.54 |
| VIT_06s0009g01620.t01 | Wine grape | plasma membrane, plastid | 34.97 | 40.07 |
| KRH14686 | Soybean | plastid | 35.29 | 39.56 |
| GSMUA_Achr3P03620_001 | Banana | cytosol, peroxisome, vacuole | 33.99 | 39.39 |
| PGSC0003DMT400022474 | Potato | plastid | 34.31 | 38.89 |
| KRH73453 | Soybean | plastid | 34.31 | 38.46 |
| PGSC0003DMT400005086 | Potato | plastid | 32.35 | 37.64 |
| CDY48196 | Canola | cytosol, peroxisome, plasma membrane | 31.37 | 36.92 |
| Bra034321.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 31.37 | 36.92 |
| Solyc01g009160.2.1 | Tomato | plastid | 31.37 | 36.36 |
| CDX77067 | Canola | cytosol, peroxisome, plasma membrane, plastid | 30.39 | 35.77 |
| HORVU5Hr1G058740.3 | Barley | cytosol, plastid | 19.61 | 35.5 |
| CDX83252 | Canola | cytosol, peroxisome, plasma membrane | 28.76 | 34.38 |
| Bra000526.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 28.76 | 34.38 |
| CDY38543 | Canola | cytosol, peroxisome, plasma membrane | 28.43 | 33.98 |
| AT2G27080.1 | Thale cress | cytosol, peroxisome, plasma membrane | 28.76 | 33.85 |
| HORVU3Hr1G079540.2 | Barley | plastid | 42.48 | 32.99 |
| HORVU1Hr1G044080.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 27.12 | 31.92 |
| CDY09100 | Canola | cytosol | 30.72 | 31.02 |
| CDY09101 | Canola | cytosol | 29.41 | 30.72 |
| Bra020148.1-P | Field mustard | cytosol | 29.09 | 30.38 |
| AT5G21130.1 | Thale cress | cytosol | 27.78 | 30.25 |
| Bra020147.1-P | Field mustard | cytosol | 29.74 | 30.03 |
| CDX88825 | Canola | cytosol | 29.41 | 29.8 |
| HORVU6Hr1G013910.1 | Barley | mitochondrion | 36.27 | 29.6 |
| Bra006594.1-P | Field mustard | nucleus | 29.09 | 29.47 |
| HORVU2Hr1G119500.1 | Barley | peroxisome | 23.86 | 28.97 |
| CDX70963 | Canola | cytosol | 28.1 | 28.48 |
| HORVU4Hr1G018760.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 18.95 | 24.79 |
| HORVU5Hr1G052650.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 16.67 | 23.18 |
| HORVU4Hr1G018720.1 | Barley | cytosol | 10.78 | 21.15 |
Protein Annotations
| EnsemblPlants:HORVU0Hr1G010640.1 | EnsemblPlantsGene:HORVU0Hr1G010640 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:LEA_2 |
| PANTHER:PTHR31852 | PANTHER:PTHR31852:SF42 | PFAM:PF03168 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000B487438 |
| UniProt:A0A287DZ51 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chrchrUn:+:60716907..60718190
Molecular Weight (calculated)
33435.3 Da
IEP (calculated)
10.920
GRAVY (calculated)
-0.153
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: QDSIRTHLDH TLFSPVLLEL TSPRPGRVMA DRVHPIPAPP HPASPLPPPD QEDAAATETT PLHPTFYGPP APPPGTYIVQ IPKDQVLRVP PPDRARRYKS
101: LAERPVRRRR LRRACFGACG AVLFLAISAA VFVGAVYLVF RPRAPAFSVA SLSIRGLDAV APSLSPELDV TLRADNGANK KVGVDYRGAG EVAVSYSGVR
201: LAAGQWPAFH QAPRNVTVYS TTLRGTGVSF SDEQRKQLAA EQAARALPLT VEARLPVRLR FGKVLRTWTV DVKATCQVTV DKLAGEAAAA NRGCRVKVRP
301: FLWWWW
101: LAERPVRRRR LRRACFGACG AVLFLAISAA VFVGAVYLVF RPRAPAFSVA SLSIRGLDAV APSLSPELDV TLRADNGANK KVGVDYRGAG EVAVSYSGVR
201: LAAGQWPAFH QAPRNVTVYS TTLRGTGVSF SDEQRKQLAA EQAARALPLT VEARLPVRLR FGKVLRTWTV DVKATCQVTV DKLAGEAAAA NRGCRVKVRP
301: FLWWWW
001: MAERVYPADS PPQSGQFSGN FSSGEFPKKP APPPSTYVIQ VPKDQIYRIP PPENAHRFEQ LSRKKTNRSN CRCCFCSFLA AVFILIVLAG ISFAVLYLIY
101: RPEAPKYSIE GFSVSGINLN STSPISPSFN VTVRSRNGNG KIGVYYEKES SVDVYYNDVD ISNGVMPVFY QPAKNVTVVK LVLSGSKIQL TSGMRKEMRN
201: EVSKKTVPFK LKIKAPVKIK FGSVKTWTMI VNVDCDVTVD KLTAPSRIVS RKCSHDVDLW
101: RPEAPKYSIE GFSVSGINLN STSPISPSFN VTVRSRNGNG KIGVYYEKES SVDVYYNDVD ISNGVMPVFY QPAKNVTVVK LVLSGSKIQL TSGMRKEMRN
201: EVSKKTVPFK LKIKAPVKIK FGSVKTWTMI VNVDCDVTVD KLTAPSRIVS RKCSHDVDLW
Arabidopsis Description
NHL13NDR1/HIN1-like protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD2]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.