Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G171200.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 87.27 | 91.87 |
| TraesCS5D01G176000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 84.55 | 89.0 |
| TraesCS5B01G168700.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 84.09 | 88.52 |
| Zm00001d005265_P001 | Maize | endoplasmic reticulum, plasma membrane, plastid | 70.45 | 74.52 |
| EER98613 | Sorghum | endoplasmic reticulum, plasma membrane, plastid | 70.45 | 74.52 |
| Os09t0267400-01 | Rice | plasma membrane | 68.64 | 71.9 |
| PGSC0003DMT400047270 | Potato | cytosol | 32.73 | 33.49 |
| PGSC0003DMT400047271 | Potato | cytosol, golgi, plasma membrane | 29.09 | 28.57 |
| KRH22411 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 27.73 | 26.29 |
| HORVU1Hr1G044080.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 30.45 | 25.77 |
| KRH26927 | Soybean | cytosol | 18.64 | 24.7 |
| Solyc07g054250.2.1 | Tomato | cytosol, nucleus, plastid | 29.09 | 23.62 |
| HORVU4Hr1G018760.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 24.55 | 23.08 |
| HORVU5Hr1G058740.3 | Barley | cytosol, plastid | 17.27 | 22.49 |
| HORVU2Hr1G119500.1 | Barley | peroxisome | 25.0 | 21.83 |
| HORVU4Hr1G026770.2 | Barley | cytosol, plasma membrane | 27.73 | 20.2 |
| HORVU0Hr1G010640.1 | Barley | cytosol, peroxisome | 23.18 | 16.67 |
| HORVU6Hr1G013910.1 | Barley | mitochondrion | 27.27 | 16.0 |
| HORVU3Hr1G079540.2 | Barley | plastid | 28.64 | 15.99 |
| HORVU4Hr1G018720.1 | Barley | cytosol | 10.45 | 14.74 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G052650.2 | EnsemblPlantsGene:HORVU5Hr1G052650 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:LEA_2 |
| PANTHER:PTHR31852 | PANTHER:PTHR31852:SF30 | PFAM:PF03168 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000B46D1C0 |
| UniProt:A0A287R7X6 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chrchr5H:+:412570418..412571335
Molecular Weight (calculated)
23925.9 Da
IEP (calculated)
7.414
GRAVY (calculated)
0.005
Length
220 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKRSVPRYP EDENKGGGIC CCLCGCCCFL LVIMALVAGA VIHFFYTMHP KAPSYSISKM AVSKFDFSSS DLTLYTKLVA TVRAENPNDK IGIKYAEGSH
101: TVVSYRGTPL CSGKLPTFFQ GHNNVTMLEI SMEGRHGFGS GLQDALEESE KAGNVPLDVY VTVPVQLQLD TYDLSQIKVN VHAALVVDSI SPKKPPTIKS
201: ATYQGNWSWG GMDTHVCTVM
101: TVVSYRGTPL CSGKLPTFFQ GHNNVTMLEI SMEGRHGFGS GLQDALEESE KAGNVPLDVY VTVPVQLQLD TYDLSQIKVN VHAALVVDSI SPKKPPTIKS
201: ATYQGNWSWG GMDTHVCTVM
001: MGDQQKIHPV LQMEANKTKT TTPAPGKTVL LPVQRPIPPP VIPSKNRNMC CKIFCWVLSL LVIALIALAI AVAVVYFVFH PKLPSYEVNS LRVTNLGINL
101: DLSLSAEFKV EITARNPNEK IGIYYEKGGH IGVWYDKTKL CEGPIPRFYQ GHRNVTKLNV ALTGRAQYGN TVLAALQQQQ QTGRVPLDLK VNAPVAIKLG
201: NLKMKKIRIL GSCKLVVDSL STNNNINIKA SDCSFKAKL
101: DLSLSAEFKV EITARNPNEK IGIYYEKGGH IGVWYDKTKL CEGPIPRFYQ GHRNVTKLNV ALTGRAQYGN TVLAALQQQQ QTGRVPLDLK VNAPVAIKLG
201: NLKMKKIRIL GSCKLVVDSL STNNNINIKA SDCSFKAKL
Arabidopsis Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Source:UniProtKB/TrEMBL;Acc:Q9SLI0]
SUBAcon: [peroxisome,plastid,cytosol,plasma membrane]
SUBAcon: [peroxisome,plastid,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.