Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 3
- golgi 3
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400047270 | Potato | cytosol | 57.59 | 60.0 |
| Zm00001d005265_P001 | Maize | endoplasmic reticulum, plasma membrane, plastid | 30.36 | 32.69 |
| EER98613 | Sorghum | endoplasmic reticulum, plasma membrane, plastid | 29.91 | 32.21 |
| Os09t0267400-01 | Rice | plasma membrane | 29.91 | 31.9 |
| TraesCS5A01G171200.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 28.57 | 30.62 |
| TraesCS5D01G176000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 28.57 | 30.62 |
| KRH22411 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 31.25 | 30.17 |
| TraesCS5B01G168700.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 28.12 | 30.14 |
| KRH26927 | Soybean | cytosol | 21.88 | 29.52 |
| HORVU5Hr1G052650.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 28.57 | 29.09 |
| Os08t0324200-01 | Rice | cytosol | 30.36 | 28.1 |
| PGSC0003DMT400050761 | Potato | cytosol, plasma membrane, vacuole | 32.59 | 28.08 |
| PGSC0003DMT400055257 | Potato | plasma membrane, plastid | 29.91 | 25.87 |
| PGSC0003DMT400039340 | Potato | plastid | 28.57 | 24.81 |
| PGSC0003DMT400022474 | Potato | plastid | 28.57 | 23.7 |
| PGSC0003DMT400005086 | Potato | plastid | 26.34 | 22.43 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400047271 | EnsemblPlantsGene:PGSC0003DMG400018355 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR31852 |
| PANTHER:PTHR31852:SF35 | PGSC:PGSC0003DMG400018355 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000295B80E | UniProt:M1BKF5 |
| MapMan:35.1 | : | : | : | : | : |
Description
HIN1 [Source:PGSC_GENE;Acc:PGSC0003DMG400018355]
Coordinates
chr7:+:48916861..48917944
Molecular Weight (calculated)
25281.8 Da
IEP (calculated)
8.618
GRAVY (calculated)
-0.169
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MHRPPPYGMA GDGRPPPYPY GGEYYPHERR RGGNICVRCI CCCYCVLFFI VLIIAAITLY LFTVYDPKAP IYKFEALDVK EFGYNDSNIN ADLILTLKAD
101: NPNKAIGFIY EEANTFNVTY NGSTICSGKF PSFHQGHKNM TMLQIELKGK NPFALGLYES LQDNERHGKV PLIILAKVPF KPVLGDSKLR EFNILANVTI
201: SVHDMKLGKK TEIEQSKINY SLAK
101: NPNKAIGFIY EEANTFNVTY NGSTICSGKF PSFHQGHKNM TMLQIELKGK NPFALGLYES LQDNERHGKV PLIILAKVPF KPVLGDSKLR EFNILANVTI
201: SVHDMKLGKK TEIEQSKINY SLAK
001: MSQHQKIYPV QDPEAATARP TAPLVPRGSS RSEHGDPSKV PLNQRPQRFV PLAPPKKRRS CCCRCFCYTF CFLLLLVVAV GASIGILYLV FKPKLPDYSI
101: DRLQLTRFAL NQDSSLTTAF NVTITAKNPN EKIGIYYEDG SKITVWYMEH QLSNGSLPKF YQGHENTTVI YVEMTGQTQN ASGLRTTLEE QQQRTGNIPL
201: RIRVNQPVRV KFGKLKLFEV RFLVRCGVFV DSLATNNVIK IQSSSCKFRL RL
101: DRLQLTRFAL NQDSSLTTAF NVTITAKNPN EKIGIYYEDG SKITVWYMEH QLSNGSLPKF YQGHENTTVI YVEMTGQTQN ASGLRTTLEE QQQRTGNIPL
201: RIRVNQPVRV KFGKLKLFEV RFLVRCGVFV DSLATNNVIK IQSSSCKFRL RL
Arabidopsis Description
NHL6NDR1/HIN1-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LD98]
SUBAcon: [plasma membrane,plastid]
SUBAcon: [plasma membrane,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.