CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, endoplasmic reticulum, plastid

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
plastid 2
extracellular 1
golgi 1
plasma membrane 2
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005265_P001	Maize	endoplasmic reticulum, plasma membrane, plastid	96.63	96.63
Os09t0267400-01	Rice	plasma membrane	79.33	78.57
TraesCS5A01G171200.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	75.96	75.6
TraesCS5D01G176000.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	73.08	72.73
TraesCS5B01G168700.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	73.08	72.73
HORVU5Hr1G052650.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	74.52	70.45
PGSC0003DMT400047270	Potato	cytosol	38.94	37.67
PGSC0003DMT400047271	Potato	cytosol, golgi, plasma membrane	32.21	29.91
KRH26927	Soybean	cytosol	23.56	29.52
KRH22411	Soybean	cytosol, endoplasmic reticulum, plasma membrane	32.21	28.88
OQU85155	Sorghum	extracellular, plasma membrane	25.96	27.55
EES13101	Sorghum	cytosol	31.25	26.32
Solyc07g054250.2.1	Tomato	cytosol, nucleus, plastid	31.73	24.35
OQU90204	Sorghum	mitochondrion, plastid	25.48	24.31
EES06862	Sorghum	peroxisome	26.44	23.31
KXG38271	Sorghum	cytosol, nucleus, vacuole	30.77	23.19
OQU87732	Sorghum	cytosol	30.77	21.69
EES15581	Sorghum	cytosol, mitochondrion, peroxisome	28.85	19.67
EES09185	Sorghum	plastid	27.88	14.65
OQU88420	Sorghum	mitochondrion	24.04	14.33

Protein Annotations

EnsemblPlants:EER98613	EnsemblPlantsGene:SORBI_3002G150400	EntrezGene:8062026	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:LEA_2	PANTHER:PTHR31852	PANTHER:PTHR31852:SF30	PFAM:PF03168	ProteinID:EER98613	ProteinID:EER98613.1
RefSeq:XP_002462092.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0001A842F3	UniProt:C5X7K9	MapMan:35.1

Description

hypothetical protein

Coordinates

chr2:-:42579607..42580641

Molecular Weight (calculated)

22793.6 Da

IEP (calculated)

7.632

GRAVY (calculated)

0.029

Length

208 amino acids

Sequence
(BLAST)

001: MGKRSVPRYP EDEDKGGCCG CLCWCCCFLL LIVAVLAGTA AYFFFVYKPK APSYSVSNMS VSQFDFKSSD LTLYVKLTAS VRAENPNEMI TIKYGEGSHT
101: VVSYRGTPLC SGKLPAFFQG YKNVTVMDIS MEGRHGFGSG LQQALEESEK AGDIPLDIFV SVPVELQLGS LDLRQVKVNV HCALVLDSIS PKKKPNIKSA
201: TYQANVEF

Best Arabidopsis Sequence Match ( AT1G54540.1 )
(BLAST)

001: MGDQQKIHPV LQMEANKTKT TTPAPGKTVL LPVQRPIPPP VIPSKNRNMC CKIFCWVLSL LVIALIALAI AVAVVYFVFH PKLPSYEVNS LRVTNLGINL
101: DLSLSAEFKV EITARNPNEK IGIYYEKGGH IGVWYDKTKL CEGPIPRFYQ GHRNVTKLNV ALTGRAQYGN TVLAALQQQQ QTGRVPLDLK VNAPVAIKLG
201: NLKMKKIRIL GSCKLVVDSL STNNNINIKA SDCSFKAKL

Arabidopsis Description

Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Source:UniProtKB/TrEMBL;Acc:Q9SLI0]
SUBAcon: [cytosol,plasma membrane,peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.