Factsheet for PGSC0003DMT400047270

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, extracellular, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g054250.2.1	Tomato	cytosol, nucleus, plastid	74.42	59.04
PGSC0003DMT400047271	Potato	cytosol, golgi, plasma membrane	60.0	57.59
EER98613	Sorghum	endoplasmic reticulum, plasma membrane, plastid	37.67	38.94
Zm00001d005265_P001	Maize	endoplasmic reticulum, plasma membrane, plastid	37.21	38.46
Os09t0267400-01	Rice	plasma membrane	36.28	37.14
TraesCS5A01G171200.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	35.81	36.84
TraesCS5B01G168700.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	34.42	35.41
TraesCS5D01G176000.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	33.95	34.93
HORVU5Hr1G052650.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	33.49	32.73
Os08t0324200-01	Rice	cytosol	33.49	29.75
KRH22411	Soybean	cytosol, endoplasmic reticulum, plasma membrane	31.16	28.88
PGSC0003DMT400055257	Potato	plasma membrane, plastid	33.95	28.19
PGSC0003DMT400039340	Potato	plastid	33.49	27.91
KRH26927	Soybean	cytosol	21.4	27.71
PGSC0003DMT400050761	Potato	cytosol, plasma membrane, vacuole	33.49	27.69
PGSC0003DMT400022474	Potato	plastid	32.56	25.93
PGSC0003DMT400005086	Potato	plastid	31.63	25.86

Protein Annotations

EnsemblPlants:PGSC0003DMT400047270	EnsemblPlantsGene:PGSC0003DMG400018354	EntrezGene:102600286	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:LEA_2	PANTHER:PTHR31852	PANTHER:PTHR31852:SF35	PFAM:PF03168	PGSC:PGSC0003DMG400018354	RefSeq:XP_006357497.1
SEG:seg	SUPFAM:SSF117070	TMHMM:TMhelix	UniParc:UPI0002957A4B	UniProt:M1BKF4	MapMan:35.1

Description

HIN1 [Source:PGSC_GENE;Acc:PGSC0003DMG400018354]

Coordinates

chr7:+:48918855..48919927

Molecular Weight (calculated)

24357.5 Da

IEP (calculated)

8.433

GRAVY (calculated)

-0.123

Length

215 amino acids

Sequence
(BLAST)

001: MGEYGRPPPY GGEYYYTEKR RGGNFCVRCI CCCYCVLFLL IIILASIAFY FYMYYKPKIP TYDFQSLDVK DFGYQPDFSV NVDLILTMKA NNPNTAIGFI
101: YGEGSSVNVT YSDSNICTGK LPSFHQGQKN TTIFQIELTG KSTFGSGLYE AFQENEKNGK IPLKVMIKVP VQIILGDIKL KQFNVFANVT LTVHDLKPGK
201: KPEVEHSKPT FDVKF

Best Arabidopsis Sequence Match ( AT1G54540.1 )
(BLAST)

001: MGDQQKIHPV LQMEANKTKT TTPAPGKTVL LPVQRPIPPP VIPSKNRNMC CKIFCWVLSL LVIALIALAI AVAVVYFVFH PKLPSYEVNS LRVTNLGINL
101: DLSLSAEFKV EITARNPNEK IGIYYEKGGH IGVWYDKTKL CEGPIPRFYQ GHRNVTKLNV ALTGRAQYGN TVLAALQQQQ QTGRVPLDLK VNAPVAIKLG
201: NLKMKKIRIL GSCKLVVDSL STNNNINIKA SDCSFKAKL

Arabidopsis Description

Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Source:UniProtKB/TrEMBL;Acc:Q9SLI0]
SUBAcon: [peroxisome,plastid,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.