Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- vacuole 2
- extracellular 1
- endoplasmic reticulum 1
- plasma membrane 1
- golgi 1
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g019920.1.1 | Tomato | plastid | 92.64 | 96.76 |
| KRH34277 | Soybean | plasma membrane | 65.12 | 66.67 |
| KRG92519 | Soybean | cytosol | 64.34 | 66.4 |
| VIT_16s0039g00340.t01 | Wine grape | cytosol | 66.28 | 59.38 |
| GSMUA_Achr5P11970_001 | Banana | cytosol, peroxisome, plasma membrane | 53.88 | 56.5 |
| PGSC0003DMT400050761 | Potato | cytosol, plasma membrane, vacuole | 55.43 | 55.0 |
| PGSC0003DMT400055257 | Potato | plasma membrane, plastid | 53.1 | 52.9 |
| AT1G54540.1 | Thale cress | cytosol, peroxisome, plasma membrane, plastid | 47.67 | 51.46 |
| Bra027969.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 53.49 | 51.3 |
| GSMUA_Achr9P20600_001 | Banana | nucleus, peroxisome, plasma membrane | 46.12 | 49.58 |
| GSMUA_Achr3P14210_001 | Banana | plasma membrane | 46.12 | 49.17 |
| TraesCS1A01G167100.1 | Wheat | cytosol, nucleus, peroxisome | 46.9 | 47.83 |
| HORVU1Hr1G044080.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 47.29 | 46.92 |
| TraesCS1D01G173800.1 | Wheat | cytosol, nucleus, plasma membrane | 48.06 | 46.62 |
| TraesCS1B01G183500.1 | Wheat | cytosol, nucleus, plasma membrane | 48.06 | 46.62 |
| Zm00001d013947_P001 | Maize | cytosol | 45.74 | 44.53 |
| Zm00001d032620_P001 | Maize | cytosol | 46.12 | 43.43 |
| KXG38271 | Sorghum | cytosol, nucleus, vacuole | 45.35 | 42.39 |
| OQU85155 | Sorghum | extracellular, plasma membrane | 29.84 | 39.29 |
| GSMUA_Achr1P17720_001 | Banana | plasma membrane | 41.09 | 38.97 |
| TraesCS4A01G216800.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 30.62 | 35.75 |
| TraesCS4D01G091900.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 31.01 | 35.4 |
| TraesCS4A01G217000.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome, plastid | 31.01 | 35.4 |
| HORVU2Hr1G119500.1 | Barley | peroxisome | 33.72 | 34.52 |
| TraesCS4B01G095400.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 31.01 | 34.48 |
| OQU90204 | Sorghum | mitochondrion, plastid | 29.07 | 34.4 |
| TraesCS4D01G092200.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 29.84 | 34.22 |
| HORVU4Hr1G018760.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 31.01 | 34.19 |
| TraesCS2D01G561400.1 | Wheat | peroxisome | 33.33 | 33.99 |
| Os04t0677300-01 | Rice | plastid | 33.33 | 33.73 |
| EES13101 | Sorghum | cytosol | 32.17 | 33.6 |
| TraesCS2A01G593300.1 | Wheat | peroxisome | 32.95 | 33.6 |
| PGSC0003DMT400047270 | Potato | cytosol | 27.91 | 33.49 |
| TraesCS2B01G591000.1 | Wheat | peroxisome | 32.95 | 33.46 |
| TraesCS4B01G095300.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 29.07 | 33.19 |
| Zm00001d001832_P001 | Maize | plastid | 31.4 | 32.27 |
| PGSC0003DMT400005086 | Potato | plastid | 32.56 | 31.94 |
| Os02t0507900-00 | Rice | cytosol | 30.62 | 31.6 |
| EES06862 | Sorghum | peroxisome | 27.91 | 30.51 |
| PGSC0003DMT400022474 | Potato | plastid | 31.01 | 29.63 |
| PGSC0003DMT400047271 | Potato | cytosol, golgi, plasma membrane | 24.81 | 28.57 |
| HORVU4Hr1G018720.1 | Barley | cytosol | 15.12 | 25.0 |
| OQU88420 | Sorghum | mitochondrion | 29.84 | 22.06 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400039340 | EnsemblPlantsGene:PGSC0003DMG400015214 | EntrezGene:102578226 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:LEA_2 | PANTHER:PTHR31852 | PANTHER:PTHR31852:SF48 | PFAM:PF03168 | PGSC:PGSC0003DMG400015214 | RefSeq:XP_006351537.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI000296F855 | UniProt:M1B858 | MapMan:35.1 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400015214]
Coordinates
chr3:-:50198182..50199202
Molecular Weight (calculated)
29133.2 Da
IEP (calculated)
10.691
GRAVY (calculated)
-0.092
Length
258 amino acids
Sequence
(BLAST)
(BLAST)
001: MTENQRIHPV VDMEAPPPTR TTRPLVPRGS FKSEKGDPTR LQQPTVNQPF RRTVPVMYSR PPTKKRSCFC KCICWTISLI ILLLIIIAAI AGILYLVFKP
101: KIPQYSVDNL RISDLRLNFD MSLYARFNVR ITAVNPNKKI GIYYEKGSHL SVWYKNTQLC KGSLPKFYQG HQNRTVLDVA LTGQSQYGNT LMSAIQEAAQ
201: TGRIPLDLKI QVPVSVKLGK LKLRKVKILG DCLLIVDSLS TNSLVRIKSS TCKFGLKL
101: KIPQYSVDNL RISDLRLNFD MSLYARFNVR ITAVNPNKKI GIYYEKGSHL SVWYKNTQLC KGSLPKFYQG HQNRTVLDVA LTGQSQYGNT LMSAIQEAAQ
201: TGRIPLDLKI QVPVSVKLGK LKLRKVKILG DCLLIVDSLS TNSLVRIKSS TCKFGLKL
001: MSDHQKIHPV SDPEAPPHPT APLVPRGSSR SEHGDPTKTQ QAAPLDPPRE KKGSRSCWCR CVCYTLLVLF LLIVIVGAIV GILYLVFRPK FPDYNIDRLQ
101: LTRFQLNQDL SLSTAFNVTI TAKNPNEKIG IYYEDGSKIS VLYMQTRISN GSLPKFYQGH ENTTIILVEM TGFTQNATSL MTTLQEQQRL TGSIPLRIRV
201: TQPVRIKLGK LKLMKVRFLV RCGVSVDSLA ANSVIRVRSS NCKYRFRL
101: LTRFQLNQDL SLSTAFNVTI TAKNPNEKIG IYYEDGSKIS VLYMQTRISN GSLPKFYQGH ENTTIILVEM TGFTQNATSL MTTLQEQQRL TGSIPLRIRV
201: TQPVRIKLGK LKLMKVRFLV RCGVSVDSLA ANSVIRVRSS NCKYRFRL
Arabidopsis Description
NHL25NHL25 [Source:UniProtKB/TrEMBL;Acc:A0A178UFH9]
SUBAcon: [peroxisome,nucleus,plasma membrane]
SUBAcon: [peroxisome,nucleus,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.