Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- peroxisome 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G591000.1 | Wheat | peroxisome | 97.63 | 97.24 |
| TraesCS2D01G561400.1 | Wheat | peroxisome | 95.65 | 95.65 |
| HORVU2Hr1G119500.1 | Barley | peroxisome | 90.12 | 90.48 |
| EES13101 | Sorghum | cytosol | 70.36 | 72.06 |
| Zm00001d001832_P001 | Maize | plastid | 70.36 | 70.92 |
| Os04t0677300-01 | Rice | plastid | 70.36 | 69.8 |
| GSMUA_Achr9P20600_001 | Banana | nucleus, peroxisome, plasma membrane | 41.5 | 43.75 |
| TraesCS1A01G167100.1 | Wheat | cytosol, nucleus, peroxisome | 40.32 | 40.32 |
| CDY16419 | Canola | plastid | 39.13 | 39.92 |
| KRG98056 | Soybean | cytosol, peroxisome, plasma membrane | 38.34 | 39.75 |
| Bra039737.1-P | Field mustard | plasma membrane, plastid | 38.74 | 39.52 |
| GSMUA_Achr3P14210_001 | Banana | plasma membrane | 37.55 | 39.26 |
| CDY72163 | Canola | plastid | 38.34 | 39.11 |
| GSMUA_Achr1P17720_001 | Banana | plasma membrane | 41.11 | 38.24 |
| KRH30725 | Soybean | cytosol, nucleus, plasma membrane | 37.15 | 38.21 |
| AT5G36970.1 | Thale cress | nucleus, peroxisome, plasma membrane | 36.76 | 37.5 |
| AT1G65690.1 | Thale cress | plasma membrane, plastid | 37.15 | 37.3 |
| KRH72891 | Soybean | nucleus, peroxisome, plasma membrane | 37.55 | 37.25 |
| CDY53530 | Canola | cytosol, nucleus, plasma membrane | 37.15 | 36.86 |
| KRH17244 | Soybean | cytosol, peroxisome, plasma membrane | 37.55 | 36.54 |
| CDX74604 | Canola | cytosol, nucleus, plasma membrane | 36.76 | 36.47 |
| Bra028103.1-P | Field mustard | cytosol, nucleus, plasma membrane | 36.76 | 36.47 |
| VIT_04s0069g01010.t01 | Wine grape | plasma membrane | 35.57 | 35.86 |
| KRG92519 | Soybean | cytosol | 35.18 | 35.6 |
| KRH34277 | Soybean | plasma membrane | 34.39 | 34.52 |
| PGSC0003DMT400055257 | Potato | plasma membrane, plastid | 33.99 | 33.2 |
| Solyc02g036480.1.1 | Tomato | nucleus | 33.6 | 33.2 |
| VIT_16s0039g00340.t01 | Wine grape | cytosol | 37.55 | 32.99 |
| PGSC0003DMT400039340 | Potato | plastid | 33.6 | 32.95 |
| PGSC0003DMT400050761 | Potato | cytosol, plasma membrane, vacuole | 33.6 | 32.69 |
| AT1G54540.1 | Thale cress | cytosol, peroxisome, plasma membrane, plastid | 30.83 | 32.64 |
| Solyc03g019920.1.1 | Tomato | plastid | 31.62 | 32.39 |
| Bra027969.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 33.99 | 31.97 |
| TraesCS4A01G217000.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome, plastid | 28.46 | 31.86 |
| CDY26995 | Canola | cytosol | 37.94 | 31.27 |
| TraesCS2A01G489300.1 | Wheat | cytosol, extracellular, plasma membrane | 32.41 | 30.94 |
| TraesCS4A01G216800.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 26.88 | 30.77 |
| TraesCS2A01G489400.1 | Wheat | cytosol, extracellular, plasma membrane | 32.41 | 30.71 |
| TraesCS5A01G141200.1 | Wheat | cytosol, extracellular, peroxisome | 32.41 | 28.87 |
| TraesCS5A01G171200.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 22.53 | 27.27 |
| Solyc02g081450.2.1 | Tomato | cytosol, plasma membrane, vacuole | 33.99 | 26.38 |
| TraesCS3A01G336800.1 | Wheat | cytosol | 26.88 | 23.21 |
| CDY38564 | Canola | plasma membrane | 37.55 | 14.98 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G593300.1 | EnsemblPlantsGene:TraesCS2A01G593300 | InterPro:LEA_2 | PANTHER:PTHR31852 | PANTHER:PTHR31852:SF20 | PFAM:PF03168 |
| SEG:seg | TMHMM:TMhelix | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr2A:+:779890228..779890989
Molecular Weight (calculated)
27559.8 Da
IEP (calculated)
10.807
GRAVY (calculated)
-0.008
Length
253 amino acids
Sequence
(BLAST)
(BLAST)
001: MASYHRVHPV IVDGAPPPVP EQNKDKLPPP PSGAYGDRLP ITAPAPGAAA PLRAPRRKRH SRCCRCVCCT LLVLILLVVA LGATAGILYA VFRPKIPTFR
101: VERLTATRFD VNTTSMTVSD AFEVQVITDN PNRRIGVYYD GGWVAASFNG TELCRGAFPA LYQGHRSTVR PLITLQGETR LDSAVAAQLA QQRQAGFVPL
201: TVTARVPIRI KFGALKLWTM TGKARCSLVV DSLEAGTRLR IRSNSCTFKL KPN
101: VERLTATRFD VNTTSMTVSD AFEVQVITDN PNRRIGVYYD GGWVAASFNG TELCRGAFPA LYQGHRSTVR PLITLQGETR LDSAVAAQLA QQRQAGFVPL
201: TVTARVPIRI KFGALKLWTM TGKARCSLVV DSLEAGTRLR IRSNSCTFKL KPN
001: MSDHQKIHPV SDPEAPPHPT APLVPRGSSR SEHGDPTKTQ QAAPLDPPRE KKGSRSCWCR CVCYTLLVLF LLIVIVGAIV GILYLVFRPK FPDYNIDRLQ
101: LTRFQLNQDL SLSTAFNVTI TAKNPNEKIG IYYEDGSKIS VLYMQTRISN GSLPKFYQGH ENTTIILVEM TGFTQNATSL MTTLQEQQRL TGSIPLRIRV
201: TQPVRIKLGK LKLMKVRFLV RCGVSVDSLA ANSVIRVRSS NCKYRFRL
101: LTRFQLNQDL SLSTAFNVTI TAKNPNEKIG IYYEDGSKIS VLYMQTRISN GSLPKFYQGH ENTTIILVEM TGFTQNATSL MTTLQEQQRL TGSIPLRIRV
201: TQPVRIKLGK LKLMKVRFLV RCGVSVDSLA ANSVIRVRSS NCKYRFRL
Arabidopsis Description
NHL25NHL25 [Source:UniProtKB/TrEMBL;Acc:A0A178UFH9]
SUBAcon: [peroxisome,nucleus,plasma membrane]
SUBAcon: [peroxisome,nucleus,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.