Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol, peroxisome
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 2
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G151200.1 | Wheat | cytosol, extracellular, plasma membrane | 97.18 | 96.84 |
| TraesCS5B01G139500.1 | Wheat | cytosol, extracellular, peroxisome | 96.13 | 96.47 |
| HORVU0Hr1G010640.1 | Barley | cytosol, peroxisome | 91.9 | 85.29 |
| Os12t0127200-01 | Rice | extracellular, plasma membrane, vacuole | 72.89 | 75.27 |
| Os11t0130400-01 | Rice | extracellular, peroxisome, vacuole | 72.89 | 75.0 |
| TraesCS2A01G489300.1 | Wheat | cytosol, extracellular, plasma membrane | 63.38 | 67.92 |
| TraesCS2A01G489400.1 | Wheat | cytosol, extracellular, plasma membrane | 63.03 | 67.04 |
| Zm00001d005010_P001 | Maize | plastid | 65.85 | 65.85 |
| EES15581 | Sorghum | cytosol, mitochondrion, peroxisome | 67.25 | 62.62 |
| EES09185 | Sorghum | plastid | 66.55 | 47.73 |
| TraesCS3A01G336800.1 | Wheat | cytosol | 46.83 | 45.39 |
| GSMUA_Achr11P... | Banana | cytosol, peroxisome, vacuole | 39.08 | 41.42 |
| KRH14686 | Soybean | plastid | 38.38 | 39.93 |
| GSMUA_Achr3P03620_001 | Banana | cytosol, peroxisome, vacuole | 36.62 | 39.39 |
| VIT_06s0009g01620.t01 | Wine grape | plasma membrane, plastid | 36.62 | 38.95 |
| KRH73453 | Soybean | plastid | 37.32 | 38.83 |
| PGSC0003DMT400022474 | Potato | plastid | 36.62 | 38.52 |
| Bra034321.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 34.15 | 37.31 |
| CDY48196 | Canola | cytosol, peroxisome, plasma membrane | 34.15 | 37.31 |
| PGSC0003DMT400005086 | Potato | plastid | 34.51 | 37.26 |
| Solyc01g009160.2.1 | Tomato | plastid | 33.8 | 36.36 |
| CDX77067 | Canola | cytosol, peroxisome, plasma membrane, plastid | 32.75 | 35.77 |
| Bra000526.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 30.99 | 34.38 |
| CDX83252 | Canola | cytosol, peroxisome, plasma membrane | 30.99 | 34.38 |
| TraesCS1A01G167100.1 | Wheat | cytosol, nucleus, peroxisome | 30.28 | 33.99 |
| CDY38543 | Canola | cytosol, peroxisome, plasma membrane | 30.63 | 33.98 |
| AT2G27080.1 | Thale cress | cytosol, peroxisome, plasma membrane | 30.99 | 33.85 |
| TraesCS2A01G593300.1 | Wheat | peroxisome | 28.87 | 32.41 |
| CDY09100 | Canola | cytosol | 33.45 | 31.35 |
| CDY09101 | Canola | cytosol | 32.04 | 31.06 |
| Bra020148.1-P | Field mustard | cytosol | 31.69 | 30.72 |
| AT5G21130.1 | Thale cress | cytosol | 30.28 | 30.61 |
| CDX88825 | Canola | cytosol | 32.39 | 30.46 |
| Bra020147.1-P | Field mustard | cytosol | 32.39 | 30.36 |
| Bra006594.1-P | Field mustard | nucleus | 31.69 | 29.8 |
| CDX70963 | Canola | cytosol | 30.99 | 29.14 |
| TraesCS4A01G217000.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome, plastid | 22.89 | 28.76 |
| TraesCS4A01G216800.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 21.48 | 27.6 |
| TraesCS5A01G171200.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 18.66 | 25.36 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G141200.1 | EnsemblPlantsGene:TraesCS5A01G141200 | InterPro:LEA_2 | PANTHER:PTHR31852 | PANTHER:PTHR31852:SF42 | PFAM:PF03168 |
| SEG:seg | TMHMM:TMhelix | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr5A:+:313313918..313314772
Molecular Weight (calculated)
30736.0 Da
IEP (calculated)
10.928
GRAVY (calculated)
-0.108
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MADRVHPMQS PPHPASPLPP PDQEDAAAAA ATETTPLHPT FYEPPAPPPG TYIVQIPKDQ VLRVPPPDRA SRYKSLAERP VRRRRLRRAC FGACGAVLFL
101: AVAAAVFVGA VYLVFRPRAP AFSVASLSIR GLDVAALPPS SLSPELDVAL RADNGANRKV GVDYRGAGEV AVSYSGARLA AGQWPAFHQA PRNVTVLSTT
201: LRGTGVSFSD EQRKQLAAEQ AARAVPLTVE ARVPVRLRFG KVLRTWTVDV KATCQVTVDR LAGEAAAANR GCRVKVRPFL WWWW
101: AVAAAVFVGA VYLVFRPRAP AFSVASLSIR GLDVAALPPS SLSPELDVAL RADNGANRKV GVDYRGAGEV AVSYSGARLA AGQWPAFHQA PRNVTVLSTT
201: LRGTGVSFSD EQRKQLAAEQ AARAVPLTVE ARVPVRLRFG KVLRTWTVDV KATCQVTVDR LAGEAAAANR GCRVKVRPFL WWWW
001: MAERVYPADS PPQSGQFSGN FSSGEFPKKP APPPSTYVIQ VPKDQIYRIP PPENAHRFEQ LSRKKTNRSN CRCCFCSFLA AVFILIVLAG ISFAVLYLIY
101: RPEAPKYSIE GFSVSGINLN STSPISPSFN VTVRSRNGNG KIGVYYEKES SVDVYYNDVD ISNGVMPVFY QPAKNVTVVK LVLSGSKIQL TSGMRKEMRN
201: EVSKKTVPFK LKIKAPVKIK FGSVKTWTMI VNVDCDVTVD KLTAPSRIVS RKCSHDVDLW
101: RPEAPKYSIE GFSVSGINLN STSPISPSFN VTVRSRNGNG KIGVYYEKES SVDVYYNDVD ISNGVMPVFY QPAKNVTVVK LVLSGSKIQL TSGMRKEMRN
201: EVSKKTVPFK LKIKAPVKIK FGSVKTWTMI VNVDCDVTVD KLTAPSRIVS RKCSHDVDLW
Arabidopsis Description
NHL13NDR1/HIN1-like protein 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVD2]
SUBAcon: [cytosol,plasma membrane,peroxisome]
SUBAcon: [cytosol,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.