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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • plastid 2
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
ChloroP:plastid
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus, plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY09100 Canola cytosol 97.03 97.03
Bra020148.1-P Field mustard cytosol 86.8 89.76
Bra006594.1-P Field mustard nucleus 66.01 66.23
AT5G21130.1 Thale cress cytosol 57.76 62.28
Bra034321.1-P Field mustard cytosol, peroxisome, plasma membrane 38.94 45.38
Solyc01g009160.2.1 Tomato plastid 35.64 40.91
PGSC0003DMT400005086 Potato plastid 35.31 40.68
Bra000526.1-P Field mustard cytosol, peroxisome, plasma membrane 33.99 40.23
KRH73453 Soybean plastid 35.64 39.56
VIT_06s0009g01620.t01 Wine grape plasma membrane, plastid 34.65 39.33
PGSC0003DMT400022474 Potato plastid 34.98 39.26
KRH14686 Soybean plastid 35.31 39.19
GSMUA_Achr11P... Banana cytosol, peroxisome, vacuole 32.34 36.57
Os12t0127200-01 Rice extracellular, plasma membrane, vacuole 31.68 34.91
Os11t0130400-01 Rice extracellular, peroxisome, vacuole 31.35 34.42
GSMUA_Achr3P03620_001 Banana cytosol, peroxisome, vacuole 29.7 34.09
TraesCS4D01G124700.1 Wheat cytosol, extracellular, plasma membrane 30.69 33.94
TraesCSU01G191800.1 Wheat cytosol, extracellular, plasma membrane 30.03 33.46
TraesCSU01G059700.1 Wheat cytosol, extracellular, plasma membrane 30.03 33.46
OQU87732 Sorghum cytosol 32.34 33.22
TraesCS2A01G489400.1 Wheat cytosol, extracellular, plasma membrane 29.04 32.96
TraesCS2A01G489300.1 Wheat cytosol, extracellular, plasma membrane 28.71 32.83
Zm00001d005010_P001 Maize plastid 30.69 32.75
TraesCS4B01G128000.1 Wheat cytosol, extracellular, plasma membrane 29.37 32.48
TraesCS5A01G141200.1 Wheat cytosol, extracellular, peroxisome 30.36 32.39
TraesCS5D01G151200.1 Wheat cytosol, extracellular, plasma membrane 30.36 32.28
TraesCS5B01G139500.1 Wheat cytosol, extracellular, peroxisome 29.7 31.8
EES15581 Sorghum cytosol, mitochondrion, peroxisome 31.68 31.48
TraesCS3A01G336800.1 Wheat cytosol 30.36 31.4
HORVU4Hr1G026770.2 Barley cytosol, plasma membrane 30.69 30.79
Zm00001d043128_P001 Maize cytosol 29.7 30.41
TraesCS3D01G329800.1 Wheat cytosol 30.36 29.97
HORVU0Hr1G010640.1 Barley cytosol, peroxisome 30.03 29.74
TraesCS1B01G251100.1 Wheat endoplasmic reticulum, plasma membrane, plastid 23.76 28.69
Os01t0812100-01 Rice cytosol, mitochondrion, peroxisome 31.68 27.67
TraesCS3B01G367900.1 Wheat cytosol, endoplasmic reticulum, peroxisome, plastid 30.03 27.58
Bra039737.1-P Field mustard plasma membrane, plastid 21.12 25.81
Bra028103.1-P Field mustard cytosol, nucleus, plasma membrane 20.79 24.71
EES09185 Sorghum plastid 32.01 24.49
HORVU3Hr1G079540.2 Barley plastid 31.68 24.37
HORVU5Hr1G058740.3 Barley cytosol, plastid 13.2 23.67
Bra027969.1-P Field mustard cytosol, peroxisome, plasma membrane 20.46 23.05
Zm00001d028765_P001 Maize plastid 22.77 22.12
HORVU6Hr1G013910.1 Barley mitochondrion 27.06 21.87
Protein Annotations
EnsemblPlants:Bra020147.1EnsemblPlants:Bra020147.1-PEnsemblPlantsGene:Bra020147GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:LEA_2PANTHER:PTHR31852PANTHER:PTHR31852:SF0PFAM:PF03168SEG:segTMHMM:TMhelix
UniParc:UPI000254341BUniProt:M4DUF4MapMan:35.1:::
Description
AT5G21130 (E=2e-077) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: harpin-induced protein-related / HIN1-related / harpin-responsive protein-related (TAIR:AT2G27080.2); Has 592 Blast hits to 591 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 592; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Coordinates
chrA02:+:5266441..5267352
Molecular Weight (calculated)
32945.4 Da
IEP (calculated)
9.637
GRAVY (calculated)
-0.223
Length
303 amino acids
Sequence
(BLAST)
001: MGGDDSSQGS PKSTDVFITD KNIRKTKHLS IDTNDSVPQS PTSSGGFTNA SRFSGGFTNA SRYSGDSQRP KPPPPGTYLV QIPKEQIYRI PPPENARRYE
101: YLSRRKPNRS ACRRCCCYSL AALLVLATLA AALVGIFFLV FRPHKPTFSV SEVSVAGINL TSSTSLISPL IKIKVRSENV NEKLGLIYGG GSAAEIFYDG
201: AKLGDGEFTA FDQPPENVTV TVTTLRGSRI QLTSSTLEDL KESEKKGKVP FDLRVKAPFK FKVSAVTMWT MAVTVDSKLT VDKLTSSATV LTENCVTEDI
301: ILL
Best Arabidopsis Sequence Match ( AT5G21130.1 )
(BLAST)
001: MTVEKPQEMT GDTNSDGFLT NKDVHRIKHP SLDTNDSSSS RYSVDSQKSR IGPPPGTYVI KLPKDQIYRV PPPENAHRYE YLSRRKTNKS CCRRCLCYSL
101: SALLIIIVLA AIAFGFFYLV YQPHKPQFSV SGVSVTGINL TSSSPFSPVI RIKLRSQNVK GKLGLIYEKG NEADVFFNGT KLGNGEFTAF KQPAGNVTVI
201: VTVLKGSSVK LKSSSRKELT ESQKKGKVPF GLRIKAPVKF KVGSVTTWTM TITVDCKITV DKLTASATVK TENCETGLSL L
Arabidopsis Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Source:UniProtKB/TrEMBL;Acc:Q84VP8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.