Factsheet for Bra006594.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88825	Canola	cytosol	98.34	98.34
Bra020148.1-P	Field mustard	cytosol	65.56	67.58
Bra020147.1-P	Field mustard	cytosol	66.23	66.01
AT5G21130.1	Thale cress	cytosol	57.62	61.92
Bra034321.1-P	Field mustard	cytosol, peroxisome, plasma membrane	42.38	49.23
Bra000526.1-P	Field mustard	cytosol, peroxisome, plasma membrane	37.75	44.53
PGSC0003DMT400005086	Potato	plastid	36.76	42.21
Solyc01g009160.2.1	Tomato	plastid	36.09	41.29
PGSC0003DMT400022474	Potato	plastid	36.76	41.11
KRH73453	Soybean	plastid	36.76	40.66
KRH14686	Soybean	plastid	36.42	40.29
VIT_06s0009g01620.t01	Wine grape	plasma membrane, plastid	33.11	37.45
Os12t0127200-01	Rice	extracellular, plasma membrane, vacuole	31.79	34.91
GSMUA_Achr3P03620_001	Banana	cytosol, peroxisome, vacuole	29.8	34.09
TraesCSU01G191800.1	Wheat	cytosol, extracellular, plasma membrane	30.46	33.82
TraesCSU01G059700.1	Wheat	cytosol, extracellular, plasma membrane	30.46	33.82
Os11t0130400-01	Rice	extracellular, peroxisome, vacuole	30.79	33.7
TraesCS4D01G124700.1	Wheat	cytosol, extracellular, plasma membrane	30.46	33.58
GSMUA_Achr11P...	Banana	cytosol, peroxisome, vacuole	29.47	33.21
TraesCS2A01G489300.1	Wheat	cytosol, extracellular, plasma membrane	29.14	33.21
TraesCS2A01G489400.1	Wheat	cytosol, extracellular, plasma membrane	29.14	32.96
TraesCS4B01G128000.1	Wheat	cytosol, extracellular, plasma membrane	29.47	32.48
OQU87732	Sorghum	cytosol	31.46	32.2
TraesCS5D01G151200.1	Wheat	cytosol, extracellular, plasma membrane	30.13	31.93
TraesCS5B01G139500.1	Wheat	cytosol, extracellular, peroxisome	29.8	31.8
TraesCS5A01G141200.1	Wheat	cytosol, extracellular, peroxisome	29.8	31.69
Zm00001d005010_P001	Maize	plastid	29.14	30.99
Zm00001d043128_P001	Maize	cytosol	30.13	30.74
TraesCS3A01G336800.1	Wheat	cytosol	29.8	30.72
EES15581	Sorghum	cytosol, mitochondrion, peroxisome	30.79	30.49
HORVU4Hr1G026770.2	Barley	cytosol, plasma membrane	30.46	30.46
TraesCS3D01G329800.1	Wheat	cytosol	30.46	29.97
HORVU0Hr1G010640.1	Barley	cytosol, peroxisome	29.47	29.09
TraesCS1B01G251100.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	24.17	29.08
TraesCS3B01G367900.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	30.13	27.58
Os01t0812100-01	Rice	cytosol, mitochondrion, peroxisome	30.13	26.22
Bra039737.1-P	Field mustard	plasma membrane, plastid	20.53	25.0
HORVU5Hr1G058740.3	Barley	cytosol, plastid	13.91	24.85
Bra028103.1-P	Field mustard	cytosol, nucleus, plasma membrane	20.86	24.71
HORVU3Hr1G079540.2	Barley	plastid	31.46	24.11
Bra027969.1-P	Field mustard	cytosol, peroxisome, plasma membrane	21.19	23.79
EES09185	Sorghum	plastid	30.79	23.48
Zm00001d028765_P001	Maize	plastid	22.19	21.47
HORVU6Hr1G013910.1	Barley	mitochondrion	26.49	21.33

Protein Annotations

EnsemblPlants:Bra006594.1	EnsemblPlants:Bra006594.1-P	EnsemblPlantsGene:Bra006594	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR31852	PANTHER:PTHR31852:SF0	SEG:seg	TMHMM:TMhelix	UniParc:UPI00025400C0	UniProt:M4CQV3
MapMan:35.1	:	:	:	:	:

Description

AT5G21130 (E=4e-090) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: harpin-induced protein-related / HIN1-related / harpin-responsive protein-related (TAIR:AT2G27080.2); Has 592 Blast hits to 591 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 592; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Coordinates

chrA03:+:4197045..4197953

Molecular Weight (calculated)

33669.6 Da

IEP (calculated)

10.368

GRAVY (calculated)

-0.351

Length

302 amino acids

Sequence
(BLAST)

001: MADNNTQPWP RNKNIRPSVD SNDTIQRSPR SSGGFTTDKD IGSRRPPRHH QSVDSVDSTS SLYSIDSRRS KPPPPGTYHV QLPKEQIYRV PPPENAHRYE
101: YLSRQKHNRS ACRRCCCYSF ATLLVLLLLA ALVVGVFFLV CRPHKPRFSV SGVSVAGINL TSPSPISPVF NIKVRCKNVN GKLGLIYEKG SAVEIFHEGI
201: KLGDGEFAAF EQPAENVTMT VTKLRGSRIQ LKSSSRKDLV ESQKRRKVLF DVRVKAPIKF RVGVVTTWTM GLTVDCKITV DKLTSSATVI TEDCVTQDIS
301: LL

Best Arabidopsis Sequence Match ( AT5G21130.1 )
(BLAST)

001: MTVEKPQEMT GDTNSDGFLT NKDVHRIKHP SLDTNDSSSS RYSVDSQKSR IGPPPGTYVI KLPKDQIYRV PPPENAHRYE YLSRRKTNKS CCRRCLCYSL
101: SALLIIIVLA AIAFGFFYLV YQPHKPQFSV SGVSVTGINL TSSSPFSPVI RIKLRSQNVK GKLGLIYEKG NEADVFFNGT KLGNGEFTAF KQPAGNVTVI
201: VTVLKGSSVK LKSSSRKELT ESQKKGKVPF GLRIKAPVKF KVGSVTTWTM TITVDCKITV DKLTASATVK TENCETGLSL L

Arabidopsis Description

Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Source:UniProtKB/TrEMBL;Acc:Q84VP8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.