CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006594.1-P	Field mustard	nucleus	98.34	98.34
CDX70963	Canola	cytosol	92.72	92.72
CDY09101	Canola	cytosol	64.9	66.89
CDY09100	Canola	cytosol	64.57	64.36
AT5G21130.1	Thale cress	cytosol	56.95	61.21
CDY48196	Canola	cytosol, peroxisome, plasma membrane	41.72	48.46
CDX77067	Canola	cytosol, peroxisome, plasma membrane, plastid	40.73	47.31
CDY38543	Canola	cytosol, peroxisome, plasma membrane	36.76	43.36
CDX83252	Canola	cytosol, peroxisome, plasma membrane	36.09	42.58
PGSC0003DMT400005086	Potato	plastid	36.42	41.83
Solyc01g009160.2.1	Tomato	plastid	35.76	40.91
PGSC0003DMT400022474	Potato	plastid	36.42	40.74
KRH73453	Soybean	plastid	35.76	39.56
KRH14686	Soybean	plastid	35.43	39.19
VIT_06s0009g01620.t01	Wine grape	plasma membrane, plastid	33.11	37.45
Os12t0127200-01	Rice	extracellular, plasma membrane, vacuole	32.12	35.27
TraesCSU01G191800.1	Wheat	cytosol, extracellular, plasma membrane	30.79	34.19
TraesCSU01G059700.1	Wheat	cytosol, extracellular, plasma membrane	30.79	34.19
GSMUA_Achr3P03620_001	Banana	cytosol, peroxisome, vacuole	29.8	34.09
Os11t0130400-01	Rice	extracellular, peroxisome, vacuole	31.13	34.06
TraesCS4D01G124700.1	Wheat	cytosol, extracellular, plasma membrane	30.79	33.94
TraesCS2A01G489300.1	Wheat	cytosol, extracellular, plasma membrane	29.47	33.58
TraesCS2A01G489400.1	Wheat	cytosol, extracellular, plasma membrane	29.47	33.33
TraesCS4B01G128000.1	Wheat	cytosol, extracellular, plasma membrane	29.8	32.85
GSMUA_Achr11P...	Banana	cytosol, peroxisome, vacuole	29.14	32.84
TraesCS5D01G151200.1	Wheat	cytosol, extracellular, plasma membrane	30.79	32.63
TraesCS5A01G141200.1	Wheat	cytosol, extracellular, peroxisome	30.46	32.39
OQU87732	Sorghum	cytosol	31.46	32.2
TraesCS5B01G139500.1	Wheat	cytosol, extracellular, peroxisome	30.13	32.16
Zm00001d005010_P001	Maize	plastid	29.8	31.69
EES15581	Sorghum	cytosol, mitochondrion, peroxisome	31.13	30.82
HORVU4Hr1G026770.2	Barley	cytosol, plasma membrane	30.79	30.79
Zm00001d043128_P001	Maize	cytosol	30.13	30.74
TraesCS3A01G336800.1	Wheat	cytosol	29.8	30.72
TraesCS3D01G329800.1	Wheat	cytosol	30.46	29.97
HORVU0Hr1G010640.1	Barley	cytosol, peroxisome	29.8	29.41
TraesCS1B01G251100.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	23.84	28.69
TraesCS3B01G367900.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	30.13	27.58
Os01t0812100-01	Rice	cytosol, mitochondrion, peroxisome	30.13	26.22
CDY72163	Canola	plastid	20.53	25.0
HORVU5Hr1G058740.3	Barley	cytosol, plastid	13.91	24.85
CDY16419	Canola	plastid	20.2	24.6
CDX74604	Canola	cytosol, nucleus, plasma membrane	20.53	24.31
CDY53530	Canola	cytosol, nucleus, plasma membrane	20.53	24.31
HORVU3Hr1G079540.2	Barley	plastid	31.46	24.11
EES09185	Sorghum	plastid	30.46	23.23
Zm00001d028765_P001	Maize	plastid	21.85	21.15
HORVU6Hr1G013910.1	Barley	mitochondrion	26.16	21.07
CDY26995	Canola	cytosol	20.2	19.87
CDY38564	Canola	plasma membrane	20.86	9.94

Protein Annotations

EnsemblPlants:CDX88825	EnsemblPlantsGene:GSBRNA2T00148899001	GO:A0A078DHX2	PANTHER:PTHR31852	PANTHER:PTHR31852:SF0	ProteinID:CDX88825
ProteinID:CDX88825.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EED67E	MapMan:35.1	:

Description

BnaA03g08240D

Coordinates

chrLK031856:-:1103643..1104551

Molecular Weight (calculated)

33612.6 Da

IEP (calculated)

10.419

GRAVY (calculated)

-0.336

Length

302 amino acids

Sequence
(BLAST)

001: MADNNTQPWP RNKNIRPSVD SNDTIQRSPR SSGGFTTDKD IGSRRPPRHH QSVDSVDSTS SLYSIDSRRS KPPPPGTYHV QLPKDQIYRV PPPENAHRYE
101: YLSRQKHNRS ACRRCCCYSF ATLLVLLLLA ALVVGVFFLV CRPHKPRFSV SGVSVAGVTL ASPSPISPVF KIKVRCKNVN GKLGLIYEKG SAVEIFHEGI
201: KLGDGEFAAF EQPAENVTMT VTKLRGSRIQ LKSSSRKDLV ESQKRRKVLF DVRVKAPIKF RVGVVTTWTM GLTVDCKITV DKLTSSATVI TEDCVTQDIS
301: LL

Best Arabidopsis Sequence Match ( AT5G21130.1 )
(BLAST)

001: MTVEKPQEMT GDTNSDGFLT NKDVHRIKHP SLDTNDSSSS RYSVDSQKSR IGPPPGTYVI KLPKDQIYRV PPPENAHRYE YLSRRKTNKS CCRRCLCYSL
101: SALLIIIVLA AIAFGFFYLV YQPHKPQFSV SGVSVTGINL TSSSPFSPVI RIKLRSQNVK GKLGLIYEKG NEADVFFNGT KLGNGEFTAF KQPAGNVTVI
201: VTVLKGSSVK LKSSSRKELT ESQKKGKVPF GLRIKAPVKF KVGSVTTWTM TITVDCKITV DKLTASATVK TENCETGLSL L

Arabidopsis Description

Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Source:UniProtKB/TrEMBL;Acc:Q84VP8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.