CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53530	Canola	cytosol, nucleus, plasma membrane	35.02	87.06
AT5G36970.1	Thale cress	nucleus, peroxisome, plasma membrane	33.91	86.69
CDX74604	Canola	cytosol, nucleus, plasma membrane	34.7	86.27
CDY26995	Canola	cytosol	36.91	76.22
CDY72163	Canola	plastid	28.23	72.18
CDY16419	Canola	plastid	28.23	72.18
VIT_04s0069g01010.t01	Wine grape	plasma membrane	23.19	58.57
KRH72891	Soybean	nucleus, peroxisome, plasma membrane	22.4	55.69
KRH17244	Soybean	cytosol, peroxisome, plasma membrane	22.71	55.38
PGSC0003DMT400055257	Potato	plasma membrane, plastid	22.56	55.21
Solyc02g036480.1.1	Tomato	nucleus	21.92	54.3
GSMUA_Achr5P11970_001	Banana	cytosol, peroxisome, plasma membrane	20.35	52.44
KRG98056	Soybean	cytosol, peroxisome, plasma membrane	19.4	50.41
KRH30725	Soybean	cytosol, nucleus, plasma membrane	19.56	50.41
PGSC0003DMT400050761	Potato	cytosol, plasma membrane, vacuole	19.56	47.69
GSMUA_Achr9P20600_001	Banana	nucleus, peroxisome, plasma membrane	17.98	47.5
GSMUA_Achr3P14210_001	Banana	plasma membrane	17.67	46.28
TraesCS1A01G167100.1	Wheat	cytosol, nucleus, peroxisome	18.45	46.25
HORVU1Hr1G044080.1	Barley	cytosol, endoplasmic reticulum, peroxisome	18.61	45.38
TraesCS1B01G183500.1	Wheat	cytosol, nucleus, plasma membrane	18.77	44.74
TraesCS1D01G173800.1	Wheat	cytosol, nucleus, plasma membrane	18.77	44.74
Solyc02g081450.2.1	Tomato	cytosol, plasma membrane, vacuole	22.08	42.94
GSMUA_Achr1P17720_001	Banana	plasma membrane	17.67	41.18
KXG38271	Sorghum	cytosol, nucleus, vacuole	17.51	40.22
EES13101	Sorghum	cytosol	15.14	38.87
Zm00001d032620_P001	Maize	cytosol	16.72	38.69
OQU85155	Sorghum	extracellular, plasma membrane	11.83	38.27
Zm00001d013947_P001	Maize	cytosol	15.93	38.11
TraesCS2D01G561400.1	Wheat	peroxisome	14.98	37.55
TraesCS2A01G593300.1	Wheat	peroxisome	14.98	37.55
Zm00001d001832_P001	Maize	plastid	14.83	37.45
HORVU2Hr1G119500.1	Barley	peroxisome	14.83	37.3
Os04t0677300-01	Rice	plastid	14.98	37.25
TraesCS2B01G591000.1	Wheat	peroxisome	14.67	36.61
OQU90204	Sorghum	mitochondrion, plastid	11.36	33.03
TraesCS4B01G095400.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	11.83	32.33
TraesCS4A01G217000.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	11.51	32.3
TraesCS4A01G216800.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	11.2	32.13
TraesCS4D01G092200.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	11.36	32.0
TraesCS4D01G091900.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	11.36	31.86
TraesCS4B01G095300.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	11.36	31.86
HORVU4Hr1G018760.1	Barley	cytosol, endoplasmic reticulum, peroxisome	11.67	31.62
EES06862	Sorghum	peroxisome	11.2	30.08
CDY38543	Canola	cytosol, peroxisome, plasma membrane	11.99	29.69
CDX77067	Canola	cytosol, peroxisome, plasma membrane, plastid	12.15	29.62
CDY48196	Canola	cytosol, peroxisome, plasma membrane	12.15	29.62
CDX83252	Canola	cytosol, peroxisome, plasma membrane	11.83	29.3
Os02t0507900-00	Rice	cytosol	11.2	28.4
HORVU4Hr1G018720.1	Barley	cytosol	5.84	23.72
CDY09101	Canola	cytosol	10.25	22.18
OQU88420	Sorghum	mitochondrion	11.99	21.78
CDY09100	Canola	cytosol	10.25	21.45
CDX88825	Canola	cytosol	9.94	20.86
CDX70963	Canola	cytosol	9.78	20.53

Protein Annotations

EnsemblPlants:CDY38564	EnsemblPlantsGene:GSBRNA2T00066234001	GO:A0A078HMJ1	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:LEA_2	PANTHER:PTHR31852	PANTHER:PTHR31852:SF48	PFAM:PF03168	ProteinID:CDY38564	ProteinID:CDY38564.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EDC6D4	UniProt:A0A078HMJ1	MapMan:35.1	:

Description

BnaA05g12930DBnaA05g12930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMJ1]

Coordinates

chrLK032426:-:206093..214239

Molecular Weight (calculated)

71509.3 Da

IEP (calculated)

9.445

GRAVY (calculated)

-0.251

Length

634 amino acids

Sequence
(BLAST)

001: MSDHQKIHPV SDPEAPPPAH PTAPLVPRGS SRSEHGDPTK ESVTQPPLLD TPPRKKRGSC CCRCVCYTLL VIFLLIVIVG AAVGILYLVF RPKLPDYNID
101: RLQLTRFTLN QDSSLSTAFN VTITAKNPNE KIGIYYEDGS RISVLYMQTR LSNGSLPKFY QGHENTTIIF VEMTGYTQNA TSLMATLQEQ QQLTGSIPLR
201: IRVIQPVRIK LGKLKLMEVK FMFMVRYGVS VDSLAANNVI SVRSNQPCLS FFTFKESASH HQFRVVSLSL LHQVTKKAHQ SAGSLISDWF GLVLPLIRSD
301: LTSGPAFIRL LGWFSSVSPF IMLCFVLAIS YTYMGSSISY VLLIWQISKG KISSMRMRMN LFTWNPLAPL DGGNLKNIGG KIGNIDTMEL SEGRLLVDLD
401: TRKALVFTKK EMIVIIISHN GRQLLKSSEI ISYRTSHSKN QHNNRFERNA RRYDYNQERA LRRPGDNRWF RPAPRQSRPY VPYEHKNEHK KLQTRREYDK
501: RADFGKSVPD DPISSQLKVS HTGRKLASII ITPSREDFAS EINVTFHNKG AARAITFSPT EKDNLYNAPD NGQVVGTLQG MEIGDSTTIV DQQNETMVEC
601: DVLGDDLLGE ELEAMEEAVF CFVLNEAVFN NYTL

Best Arabidopsis Sequence Match ( AT5G36970.1 )
(BLAST)

001: MSDHQKIHPV SDPEAPPHPT APLVPRGSSR SEHGDPTKTQ QAAPLDPPRE KKGSRSCWCR CVCYTLLVLF LLIVIVGAIV GILYLVFRPK FPDYNIDRLQ
101: LTRFQLNQDL SLSTAFNVTI TAKNPNEKIG IYYEDGSKIS VLYMQTRISN GSLPKFYQGH ENTTIILVEM TGFTQNATSL MTTLQEQQRL TGSIPLRIRV
201: TQPVRIKLGK LKLMKVRFLV RCGVSVDSLA ANSVIRVRSS NCKYRFRL

Arabidopsis Description

NHL25NHL25 [Source:UniProtKB/TrEMBL;Acc:A0A178UFH9]
SUBAcon: [peroxisome,nucleus,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.