Factsheet for VIT_04s0069g01010.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
cytosol 1
plasma membrane 4
peroxisome 1
mitochondrion 1
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	plasma membrane
Plant-mPloc:	mitochondrion, nucleus, peroxisome, plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72891	Soybean	nucleus, peroxisome, plasma membrane	64.54	63.53
KRG98056	Soybean	cytosol, peroxisome, plasma membrane	61.75	63.52
KRH30725	Soybean	cytosol, nucleus, plasma membrane	61.75	63.01
KRH17244	Soybean	cytosol, peroxisome, plasma membrane	64.14	61.92
AT5G36970.1	Thale cress	nucleus, peroxisome, plasma membrane	58.57	59.27
AT1G65690.1	Thale cress	plasma membrane, plastid	58.57	58.33
CDY72163	Canola	plastid	57.37	58.06
PGSC0003DMT400055257	Potato	plasma membrane, plastid	59.76	57.92
CDY16419	Canola	plastid	56.57	57.26
Solyc02g036480.1.1	Tomato	nucleus	58.17	57.03
Bra039737.1-P	Field mustard	plasma membrane, plastid	56.18	56.85
PGSC0003DMT400050761	Potato	cytosol, plasma membrane, vacuole	58.57	56.54
GSMUA_Achr5P11970_001	Banana	cytosol, peroxisome, plasma membrane	54.98	56.1
CDY53530	Canola	cytosol, nucleus, plasma membrane	56.97	56.08
VIT_16s0039g00340.t01	Wine grape	cytosol	63.74	55.56
Bra028103.1-P	Field mustard	cytosol, nucleus, plasma membrane	55.78	54.9
CDX74604	Canola	cytosol, nucleus, plasma membrane	55.38	54.51
GSMUA_Achr9P20600_001	Banana	nucleus, peroxisome, plasma membrane	46.61	48.75
GSMUA_Achr3P14210_001	Banana	plasma membrane	46.61	48.35
CDY26995	Canola	cytosol	57.37	46.91
TraesCS1A01G167100.1	Wheat	cytosol, nucleus, peroxisome	45.82	45.45
HORVU1Hr1G044080.1	Barley	cytosol, endoplasmic reticulum, peroxisome	46.61	45.0
TraesCS1D01G173800.1	Wheat	cytosol, nucleus, plasma membrane	47.41	44.74
TraesCS1B01G183500.1	Wheat	cytosol, nucleus, plasma membrane	47.41	44.74
Solyc02g081450.2.1	Tomato	cytosol, plasma membrane, vacuole	57.37	44.17
KXG38271	Sorghum	cytosol, nucleus, vacuole	45.42	41.3
Zm00001d013947_P001	Maize	cytosol	42.63	40.38
Zm00001d032620_P001	Maize	cytosol	43.43	39.78
GSMUA_Achr1P17720_001	Banana	plasma membrane	43.03	39.71
Zm00001d001832_P001	Maize	plastid	38.65	38.65
EES13101	Sorghum	cytosol	37.45	38.06
Os04t0677300-01	Rice	plastid	37.85	37.25
TraesCS2D01G561400.1	Wheat	peroxisome	37.05	36.76
OQU85155	Sorghum	extracellular, plasma membrane	28.29	36.22
HORVU2Hr1G119500.1	Barley	peroxisome	36.26	36.11
VIT_06s0009g01620.t01	Wine grape	plasma membrane, plastid	38.25	35.96
TraesCS2A01G593300.1	Wheat	peroxisome	35.86	35.57
TraesCS2B01G591000.1	Wheat	peroxisome	35.06	34.65
TraesCS4A01G217000.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	31.08	34.51
TraesCS4A01G216800.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	30.28	34.39
TraesCS4B01G095400.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	31.08	33.62
HORVU4Hr1G018760.1	Barley	cytosol, endoplasmic reticulum, peroxisome	31.08	33.33
TraesCS4D01G092200.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	29.48	32.89
TraesCS4D01G091900.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	29.48	32.74
TraesCS4B01G095300.1	Wheat	cytosol, endoplasmic reticulum, peroxisome	29.08	32.3
Os02t0507900-00	Rice	cytosol	31.87	32.0
OQU90204	Sorghum	mitochondrion, plastid	27.09	31.19
EES06862	Sorghum	peroxisome	27.89	29.66
HORVU4Hr1G018720.1	Barley	cytosol	15.54	25.0
CDY38564	Canola	plasma membrane	58.57	23.19
OQU88420	Sorghum	mitochondrion	29.08	20.92

Protein Annotations

EntrezGene:100244374	wikigene:100244374	MapMan:35.1	ProteinID:CBI24023	ProteinID:CBI24023.3	UniProt:D7T0F1
EMBL:FN595500	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:LEA_2	EntrezGene:LOC100244374
wikigene:LOC100244374	PFAM:PF03168	PANTHER:PTHR31852	PANTHER:PTHR31852:SF48	SUPFAM:SSF117070	TIGR:TC70671
TMHMM:TMhelix	UniParc:UPI00015CA569	ArrayExpress:VIT_04s0069g01010	EnsemblPlantsGene:VIT_04s0069g01010	EnsemblPlants:VIT_04s0069g01010.t01	RefSeq:XP_002263161
RefSeq:XP_002263161.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:+:9458009..9459027

Molecular Weight (calculated)

27802.2 Da

IEP (calculated)

10.161

GRAVY (calculated)

-0.125

Length

251 amino acids

Sequence
(BLAST)

001: MADPQRIHPA QDPEAPHTPT APLVPRGASK SDRSDPTEQY PPFQRTIPVM HSKPPKKKRS CLCKCFCWTI SLLLLLIVII AIVVAILFLV FKPKLPKYSI
101: DGLRITQLSL GSDDSLSATF DVNITARNPN TKIGIYYEGG SSITVFYTGT QLCEGSLPKF YQGHQNTTVL TVELTGQTQN ATGLLTTLQE QRETGSIPLT
201: LKVKQPVRIK LGKLKLMKMK FRATCNLVVD NLDANNTISI KSSSCKFRLK L

Best Arabidopsis Sequence Match ( AT1G65690.1 )
(BLAST)

001: MSQHQKIYPV QDPEAATARP TAPLVPRGSS RSEHGDPSKV PLNQRPQRFV PLAPPKKRRS CCCRCFCYTF CFLLLLVVAV GASIGILYLV FKPKLPDYSI
101: DRLQLTRFAL NQDSSLTTAF NVTITAKNPN EKIGIYYEDG SKITVWYMEH QLSNGSLPKF YQGHENTTVI YVEMTGQTQN ASGLRTTLEE QQQRTGNIPL
201: RIRVNQPVRV KFGKLKLFEV RFLVRCGVFV DSLATNNVIK IQSSSCKFRL RL

Arabidopsis Description

NHL6NDR1/HIN1-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LD98]
SUBAcon: [plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.