Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53530 | Canola | cytosol, nucleus, plasma membrane | 87.1 | 84.71 |
| Bra028103.1-P | Field mustard | cytosol, nucleus, plasma membrane | 86.29 | 83.92 |
| CDX74604 | Canola | cytosol, nucleus, plasma membrane | 86.29 | 83.92 |
| AT1G65690.1 | Thale cress | plasma membrane, plastid | 73.39 | 72.22 |
| CDY26995 | Canola | cytosol | 86.29 | 69.71 |
| VIT_04s0069g01010.t01 | Wine grape | plasma membrane | 59.27 | 58.57 |
| KRH72891 | Soybean | nucleus, peroxisome, plasma membrane | 57.26 | 55.69 |
| KRH17244 | Soybean | cytosol, peroxisome, plasma membrane | 58.06 | 55.38 |
| PGSC0003DMT400055257 | Potato | plasma membrane, plastid | 57.26 | 54.83 |
| Solyc02g036480.1.1 | Tomato | nucleus | 56.05 | 54.3 |
| GSMUA_Achr5P11970_001 | Banana | cytosol, peroxisome, plasma membrane | 50.4 | 50.81 |
| KRH30725 | Soybean | cytosol, nucleus, plasma membrane | 49.19 | 49.59 |
| KRG98056 | Soybean | cytosol, peroxisome, plasma membrane | 48.79 | 49.59 |
| PGSC0003DMT400050761 | Potato | cytosol, plasma membrane, vacuole | 50.81 | 48.46 |
| TraesCS1A01G167100.1 | Wheat | cytosol, nucleus, peroxisome | 47.18 | 46.25 |
| GSMUA_Achr9P20600_001 | Banana | nucleus, peroxisome, plasma membrane | 44.35 | 45.83 |
| HORVU1Hr1G044080.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 46.77 | 44.62 |
| TraesCS1B01G183500.1 | Wheat | cytosol, nucleus, plasma membrane | 47.58 | 44.36 |
| TraesCS1D01G173800.1 | Wheat | cytosol, nucleus, plasma membrane | 47.58 | 44.36 |
| GSMUA_Achr3P14210_001 | Banana | plasma membrane | 43.15 | 44.21 |
| KXG38271 | Sorghum | cytosol, nucleus, vacuole | 45.97 | 41.3 |
| AT1G54540.1 | Thale cress | cytosol, peroxisome, plasma membrane, plastid | 39.52 | 41.0 |
| GSMUA_Achr1P17720_001 | Banana | plasma membrane | 43.55 | 39.71 |
| Zm00001d032620_P001 | Maize | cytosol | 43.55 | 39.42 |
| OQU85155 | Sorghum | extracellular, plasma membrane | 31.05 | 39.29 |
| Zm00001d013947_P001 | Maize | cytosol | 41.94 | 39.25 |
| EES13101 | Sorghum | cytosol | 38.31 | 38.46 |
| Solyc02g081450.2.1 | Tomato | cytosol, plasma membrane, vacuole | 50.4 | 38.34 |
| TraesCS2D01G561400.1 | Wheat | peroxisome | 37.9 | 37.15 |
| HORVU2Hr1G119500.1 | Barley | peroxisome | 37.5 | 36.9 |
| Os04t0677300-01 | Rice | plastid | 37.9 | 36.86 |
| TraesCS2A01G593300.1 | Wheat | peroxisome | 37.5 | 36.76 |
| Zm00001d001832_P001 | Maize | plastid | 36.69 | 36.26 |
| TraesCS2B01G591000.1 | Wheat | peroxisome | 37.1 | 36.22 |
| CDY38564 | Canola | plasma membrane | 86.69 | 33.91 |
| TraesCS4A01G217000.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome, plastid | 30.24 | 33.19 |
| TraesCS4A01G216800.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 29.44 | 33.03 |
| HORVU4Hr1G018760.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 31.05 | 32.91 |
| TraesCS4D01G092200.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 29.84 | 32.89 |
| TraesCS4B01G095400.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 30.65 | 32.76 |
| TraesCS4D01G091900.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 29.84 | 32.74 |
| TraesCS4B01G095300.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 29.44 | 32.3 |
| OQU90204 | Sorghum | mitochondrion, plastid | 28.23 | 32.11 |
| EES06862 | Sorghum | peroxisome | 28.23 | 29.66 |
| AT2G27080.1 | Thale cress | cytosol, peroxisome, plasma membrane | 30.24 | 28.85 |
| Os02t0507900-00 | Rice | cytosol | 29.03 | 28.8 |
| HORVU4Hr1G018720.1 | Barley | cytosol | 15.73 | 25.0 |
| AT5G21130.1 | Thale cress | cytosol | 24.19 | 21.35 |
| OQU88420 | Sorghum | mitochondrion | 29.84 | 21.2 |
Protein Annotations
| MapMan:35.1 | EntrezGene:833667 | UniProt:A0A178UFH9 | ProteinID:AED94133.1 | ArrayExpress:AT5G36970 | EnsemblPlantsGene:AT5G36970 |
| RefSeq:AT5G36970 | TAIR:AT5G36970 | RefSeq:AT5G36970-TAIR-G | EnsemblPlants:AT5G36970.1 | TAIR:AT5G36970.1 | UniProt:F4K5V1 |
| GO:GO:0003674 | GO:GO:0005575 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009719 | GO:GO:0009814 | GO:GO:0009863 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:LEA_2 | Symbol:NHL25 | RefSeq:NP_198513.1 | ProteinID:OAO91927.1 |
| PFAM:PF03168 | PANTHER:PTHR31852 | PANTHER:PTHR31852:SF1 | TMHMM:TMhelix | UniParc:UPI0000162753 | SEG:seg |
Description
NHL25NHL25 [Source:UniProtKB/TrEMBL;Acc:A0A178UFH9]
Coordinates
chr5:-:14604199..14605310
Molecular Weight (calculated)
27961.3 Da
IEP (calculated)
10.366
GRAVY (calculated)
-0.169
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDHQKIHPV SDPEAPPHPT APLVPRGSSR SEHGDPTKTQ QAAPLDPPRE KKGSRSCWCR CVCYTLLVLF LLIVIVGAIV GILYLVFRPK FPDYNIDRLQ
101: LTRFQLNQDL SLSTAFNVTI TAKNPNEKIG IYYEDGSKIS VLYMQTRISN GSLPKFYQGH ENTTIILVEM TGFTQNATSL MTTLQEQQRL TGSIPLRIRV
201: TQPVRIKLGK LKLMKVRFLV RCGVSVDSLA ANSVIRVRSS NCKYRFRL
101: LTRFQLNQDL SLSTAFNVTI TAKNPNEKIG IYYEDGSKIS VLYMQTRISN GSLPKFYQGH ENTTIILVEM TGFTQNATSL MTTLQEQQRL TGSIPLRIRV
201: TQPVRIKLGK LKLMKVRFLV RCGVSVDSLA ANSVIRVRSS NCKYRFRL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.