Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- plastid 1
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400055257 | Potato | plasma membrane, plastid | 94.14 | 93.05 |
| VIT_04s0069g01010.t01 | Wine grape | plasma membrane | 57.03 | 58.17 |
| AT5G36970.1 | Thale cress | nucleus, peroxisome, plasma membrane | 54.3 | 56.05 |
| KRH72891 | Soybean | nucleus, peroxisome, plasma membrane | 53.91 | 54.12 |
| Bra028103.1-P | Field mustard | cytosol, nucleus, plasma membrane | 53.12 | 53.33 |
| CDY53530 | Canola | cytosol, nucleus, plasma membrane | 53.12 | 53.33 |
| KRH17244 | Soybean | cytosol, peroxisome, plasma membrane | 53.91 | 53.08 |
| CDX74604 | Canola | cytosol, nucleus, plasma membrane | 52.34 | 52.55 |
| CDY16419 | Canola | plastid | 50.78 | 52.42 |
| CDY72163 | Canola | plastid | 50.78 | 52.42 |
| KRG98056 | Soybean | cytosol, peroxisome, plasma membrane | 49.61 | 52.05 |
| Bra039737.1-P | Field mustard | plasma membrane, plastid | 50.39 | 52.02 |
| KRH30725 | Soybean | cytosol, nucleus, plasma membrane | 49.61 | 51.63 |
| Solyc03g019920.1.1 | Tomato | plastid | 49.61 | 51.42 |
| Solyc02g081450.2.1 | Tomato | cytosol, plasma membrane, vacuole | 65.23 | 51.23 |
| AT1G65690.1 | Thale cress | plasma membrane, plastid | 50.39 | 51.19 |
| GSMUA_Achr5P11970_001 | Banana | cytosol, peroxisome, plasma membrane | 48.44 | 50.41 |
| GSMUA_Achr9P20600_001 | Banana | nucleus, peroxisome, plasma membrane | 44.14 | 47.08 |
| CDY26995 | Canola | cytosol | 55.08 | 45.93 |
| GSMUA_Achr3P14210_001 | Banana | plasma membrane | 42.97 | 45.45 |
| TraesCS1A01G167100.1 | Wheat | cytosol, nucleus, peroxisome | 44.14 | 44.66 |
| HORVU1Hr1G044080.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 44.53 | 43.85 |
| TraesCS1B01G183500.1 | Wheat | cytosol, nucleus, plasma membrane | 45.31 | 43.61 |
| TraesCS1D01G173800.1 | Wheat | cytosol, nucleus, plasma membrane | 44.92 | 43.23 |
| GSMUA_Achr1P17720_001 | Banana | plasma membrane | 41.41 | 38.97 |
| OQU85155 | Sorghum | extracellular, plasma membrane | 29.3 | 38.27 |
| Zm00001d013947_P001 | Maize | cytosol | 39.45 | 38.11 |
| KXG38271 | Sorghum | cytosol, nucleus, vacuole | 41.02 | 38.04 |
| Zm00001d032620_P001 | Maize | cytosol | 39.84 | 37.23 |
| EES13101 | Sorghum | cytosol | 34.77 | 36.03 |
| Os04t0677300-01 | Rice | plastid | 35.16 | 35.29 |
| HORVU2Hr1G119500.1 | Barley | peroxisome | 33.98 | 34.52 |
| TraesCS2D01G561400.1 | Wheat | peroxisome | 33.98 | 34.39 |
| Zm00001d001832_P001 | Maize | plastid | 33.59 | 34.26 |
| TraesCS2A01G593300.1 | Wheat | peroxisome | 33.2 | 33.6 |
| TraesCS2B01G591000.1 | Wheat | peroxisome | 33.2 | 33.46 |
| OQU90204 | Sorghum | mitochondrion, plastid | 28.12 | 33.03 |
| TraesCS4A01G217000.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome, plastid | 28.12 | 31.86 |
| TraesCS4A01G216800.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 26.17 | 30.32 |
| TraesCS4D01G092200.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 26.56 | 30.22 |
| TraesCS4B01G095400.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 27.34 | 30.17 |
| TraesCS4D01G091900.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 26.56 | 30.09 |
| Os02t0507900-00 | Rice | cytosol | 29.3 | 30.0 |
| HORVU4Hr1G018760.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 26.95 | 29.49 |
| TraesCS4B01G095300.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 25.78 | 29.2 |
| Solyc01g009160.2.1 | Tomato | plastid | 30.08 | 29.17 |
| EES06862 | Sorghum | peroxisome | 26.56 | 28.81 |
| CDY38564 | Canola | plasma membrane | 54.3 | 21.92 |
| OQU88420 | Sorghum | mitochondrion | 29.3 | 21.49 |
| Solyc07g054250.2.1 | Tomato | cytosol, nucleus, plastid | 22.66 | 21.4 |
| HORVU4Hr1G018720.1 | Barley | cytosol | 12.5 | 20.51 |
Protein Annotations
| EnsemblPlants:Solyc02g036480.1.1 | EnsemblPlantsGene:Solyc02g036480.1 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:LEA_2 |
| PANTHER:PTHR31852 | PANTHER:PTHR31852:SF48 | PFAM:PF03168 | SEG:seg | SUPFAM:SSF117070 | TMHMM:TMhelix |
| UniParc:UPI00027678F8 | UniProt:K4B5U1 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr2:-:30837934..30838704
Molecular Weight (calculated)
29098.8 Da
IEP (calculated)
10.579
GRAVY (calculated)
-0.374
Length
256 amino acids
Sequence
(BLAST)
(BLAST)
001: MADQQKIHPV PEPEQVAPPP KPSAPLVPRG SSRSENGDPE RQQSPPLLKR SLTPYSPLKS PKKKRGCCVR CLCWTCCLFF LLIVLIGIAA AVIYLVFQPK
101: LPKYSIDSMR STQFNLNTDT SLSATFNVNI TARNPNKRIG IYYENGSHLS VWYKGTNLCQ GKLPKFYQGH RNTTQLNVHL TGQTENATNL LQLLQEDQQA
201: GKIPLNIRVK VPVRIKLGKL KLMKWKFLLK CSLNVDNLSQ DIIRIRDNKC KVRFRF
101: LPKYSIDSMR STQFNLNTDT SLSATFNVNI TARNPNKRIG IYYENGSHLS VWYKGTNLCQ GKLPKFYQGH RNTTQLNVHL TGQTENATNL LQLLQEDQQA
201: GKIPLNIRVK VPVRIKLGKL KLMKWKFLLK CSLNVDNLSQ DIIRIRDNKC KVRFRF
001: MSDHQKIHPV SDPEAPPHPT APLVPRGSSR SEHGDPTKTQ QAAPLDPPRE KKGSRSCWCR CVCYTLLVLF LLIVIVGAIV GILYLVFRPK FPDYNIDRLQ
101: LTRFQLNQDL SLSTAFNVTI TAKNPNEKIG IYYEDGSKIS VLYMQTRISN GSLPKFYQGH ENTTIILVEM TGFTQNATSL MTTLQEQQRL TGSIPLRIRV
201: TQPVRIKLGK LKLMKVRFLV RCGVSVDSLA ANSVIRVRSS NCKYRFRL
101: LTRFQLNQDL SLSTAFNVTI TAKNPNEKIG IYYEDGSKIS VLYMQTRISN GSLPKFYQGH ENTTIILVEM TGFTQNATSL MTTLQEQQRL TGSIPLRIRV
201: TQPVRIKLGK LKLMKVRFLV RCGVSVDSLA ANSVIRVRSS NCKYRFRL
Arabidopsis Description
NHL25NHL25 [Source:UniProtKB/TrEMBL;Acc:A0A178UFH9]
SUBAcon: [peroxisome,nucleus,plasma membrane]
SUBAcon: [peroxisome,nucleus,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.