Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- plastid 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400047270 | Potato | cytosol | 59.04 | 74.42 |
| Os09t0267400-01 | Rice | plasma membrane | 25.09 | 32.38 |
| EER98613 | Sorghum | endoplasmic reticulum, plasma membrane, plastid | 24.35 | 31.73 |
| Zm00001d005265_P001 | Maize | endoplasmic reticulum, plasma membrane, plastid | 24.35 | 31.73 |
| TraesCS5A01G171200.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 23.62 | 30.62 |
| TraesCS5B01G168700.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 23.62 | 30.62 |
| TraesCS5D01G176000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 23.62 | 30.62 |
| HORVU5Hr1G052650.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 23.62 | 29.09 |
| KRH26927 | Soybean | cytosol | 17.71 | 28.92 |
| Os08t0324200-01 | Rice | cytosol | 24.35 | 27.27 |
| KRH22411 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 21.77 | 25.43 |
| Solyc01g009160.2.1 | Tomato | plastid | 23.62 | 24.24 |
| Solyc03g019920.1.1 | Tomato | plastid | 21.4 | 23.48 |
| Solyc02g036480.1.1 | Tomato | nucleus | 21.4 | 22.66 |
| Solyc02g081450.2.1 | Tomato | cytosol, plasma membrane, vacuole | 21.77 | 18.1 |
Protein Annotations
| EnsemblPlants:Solyc07g054250.2.1 | EnsemblPlantsGene:Solyc07g054250.2 | InterPro:LEA_2 | PANTHER:PTHR31852 | PANTHER:PTHR31852:SF35 | PFAM:PF03168 |
| SEG:seg | UniParc:UPI000276C400 | UniProt:K4CFX0 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr7:-:62595166..62597880
Molecular Weight (calculated)
30348.1 Da
IEP (calculated)
8.540
GRAVY (calculated)
-0.489
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MHRPPPYGMA GDGRPPPYPY GGGEYYPQER RRGGNVFYDP KAPIYKFEAL DVKEFEYNDS NINADLIITL RADNPNKAIG FIYEEANTFN VTYSGSTICS
101: GKFPSFHHGQ KNVTMLQIEL KGKNPFAKSL YESLQVSENL IITMKTDNPN TAIGFIYGEG SSVNVTYSDS NICTGKLPSF YQGQKNTTIF QIELKGKSTF
201: GSGLYEAFQE NEKNGKIPLK VMIKVPVQII LGDIKLKQFN VFANVTLTVH DLKPGKKPEV EHSQPTFDVK F
101: GKFPSFHHGQ KNVTMLQIEL KGKNPFAKSL YESLQVSENL IITMKTDNPN TAIGFIYGEG SSVNVTYSDS NICTGKLPSF YQGQKNTTIF QIELKGKSTF
201: GSGLYEAFQE NEKNGKIPLK VMIKVPVQII LGDIKLKQFN VFANVTLTVH DLKPGKKPEV EHSQPTFDVK F
001: MGDQQKIHPV LQMEANKTKT TTPAPGKTVL LPVQRPIPPP VIPSKNRNMC CKIFCWVLSL LVIALIALAI AVAVVYFVFH PKLPSYEVNS LRVTNLGINL
101: DLSLSAEFKV EITARNPNEK IGIYYEKGGH IGVWYDKTKL CEGPIPRFYQ GHRNVTKLNV ALTGRAQYGN TVLAALQQQQ QTGRVPLDLK VNAPVAIKLG
201: NLKMKKIRIL GSCKLVVDSL STNNNINIKA SDCSFKAKL
101: DLSLSAEFKV EITARNPNEK IGIYYEKGGH IGVWYDKTKL CEGPIPRFYQ GHRNVTKLNV ALTGRAQYGN TVLAALQQQQ QTGRVPLDLK VNAPVAIKLG
201: NLKMKKIRIL GSCKLVVDSL STNNNINIKA SDCSFKAKL
Arabidopsis Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Source:UniProtKB/TrEMBL;Acc:Q9SLI0]
SUBAcon: [peroxisome,plastid,cytosol,plasma membrane]
SUBAcon: [peroxisome,plastid,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.