Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 2
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G168700.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 96.17 | 96.17 |
| TraesCS5A01G171200.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 93.3 | 93.3 |
| HORVU5Hr1G052650.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 89.0 | 84.55 |
| Os09t0267400-01 | Rice | plasma membrane | 74.16 | 73.81 |
| EER98613 | Sorghum | endoplasmic reticulum, plasma membrane, plastid | 72.73 | 73.08 |
| Zm00001d005265_P001 | Maize | endoplasmic reticulum, plasma membrane, plastid | 72.25 | 72.6 |
| PGSC0003DMT400047270 | Potato | cytosol | 34.93 | 33.95 |
| PGSC0003DMT400047271 | Potato | cytosol, golgi, plasma membrane | 30.62 | 28.57 |
| KRH22411 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 29.67 | 26.72 |
| TraesCS1D01G173800.1 | Wheat | cytosol, nucleus, plasma membrane | 33.49 | 26.32 |
| KRH26927 | Soybean | cytosol | 19.62 | 24.7 |
| TraesCS4D01G092200.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 26.32 | 24.44 |
| TraesCS4D01G091900.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 25.84 | 23.89 |
| Solyc07g054250.2.1 | Tomato | cytosol, nucleus, plastid | 30.62 | 23.62 |
| TraesCS2D01G561400.1 | Wheat | peroxisome | 27.75 | 22.92 |
| TraesCS4D01G124700.1 | Wheat | cytosol, extracellular, plasma membrane | 28.71 | 21.9 |
| TraesCS3D01G329800.1 | Wheat | cytosol | 29.67 | 20.2 |
| TraesCS5D01G151200.1 | Wheat | cytosol, extracellular, plasma membrane | 24.88 | 18.25 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G176000.1 | EnsemblPlantsGene:TraesCS5D01G176000 | InterPro:LEA_2 | PANTHER:PTHR31852 | PANTHER:PTHR31852:SF30 | PFAM:PF03168 |
| SEG:seg | TMHMM:TMhelix | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr5D:-:276263729..276264358
Molecular Weight (calculated)
22634.3 Da
IEP (calculated)
7.966
GRAVY (calculated)
-0.005
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKRSAPRYP EDENKGGGVC CCLCGCCCFL LVLVALFVGS SVYLVYTLKP KAPSYSVSKM AVSKFDFSSS DLTLYTKLVA TVRAENPNDK IGIKYADGSR
101: TVVSYRGTPL CSGKLPTFFQ GHNNVTMLEI SMEGRHGFGS GLQEALEESE KAGNVPLDVY VTVPVQLLLD TYDLPQLKVN VHAALVVDSI SPKKPPTIKS
201: ATYQGNVEY
101: TVVSYRGTPL CSGKLPTFFQ GHNNVTMLEI SMEGRHGFGS GLQEALEESE KAGNVPLDVY VTVPVQLLLD TYDLPQLKVN VHAALVVDSI SPKKPPTIKS
201: ATYQGNVEY
001: MSQHQKIYPV QDPEAATARP TAPLVPRGSS RSEHGDPSKV PLNQRPQRFV PLAPPKKRRS CCCRCFCYTF CFLLLLVVAV GASIGILYLV FKPKLPDYSI
101: DRLQLTRFAL NQDSSLTTAF NVTITAKNPN EKIGIYYEDG SKITVWYMEH QLSNGSLPKF YQGHENTTVI YVEMTGQTQN ASGLRTTLEE QQQRTGNIPL
201: RIRVNQPVRV KFGKLKLFEV RFLVRCGVFV DSLATNNVIK IQSSSCKFRL RL
101: DRLQLTRFAL NQDSSLTTAF NVTITAKNPN EKIGIYYEDG SKITVWYMEH QLSNGSLPKF YQGHENTTVI YVEMTGQTQN ASGLRTTLEE QQQRTGNIPL
201: RIRVNQPVRV KFGKLKLFEV RFLVRCGVFV DSLATNNVIK IQSSSCKFRL RL
Arabidopsis Description
NHL6NDR1/HIN1-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LD98]
SUBAcon: [plasma membrane,plastid]
SUBAcon: [plasma membrane,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.