Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G092200.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 92.48 | 92.89 |
| TraesCS4B01G095300.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 91.15 | 91.15 |
| TraesCS4B01G095400.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 92.48 | 90.09 |
| HORVU4Hr1G018760.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 91.59 | 88.46 |
| EES06862 | Sorghum | peroxisome | 73.01 | 69.92 |
| HORVU4Hr1G018720.1 | Barley | cytosol | 46.02 | 66.67 |
| Os02t0507900-00 | Rice | cytosol | 65.93 | 59.6 |
| TraesCS1D01G173800.1 | Wheat | cytosol, nucleus, plasma membrane | 47.35 | 40.23 |
| GSMUA_Achr5P11970_001 | Banana | cytosol, peroxisome, plasma membrane | 42.92 | 39.43 |
| KRH30725 | Soybean | cytosol, nucleus, plasma membrane | 36.73 | 33.74 |
| KRG98056 | Soybean | cytosol, peroxisome, plasma membrane | 35.84 | 33.2 |
| KRH34277 | Soybean | plasma membrane | 36.28 | 32.54 |
| KRG92519 | Soybean | cytosol | 35.4 | 32.0 |
| CDY72163 | Canola | plastid | 34.51 | 31.45 |
| CDY16419 | Canola | plastid | 34.51 | 31.45 |
| Bra039737.1-P | Field mustard | plasma membrane, plastid | 34.51 | 31.45 |
| AT1G54540.1 | Thale cress | cytosol, peroxisome, plasma membrane, plastid | 33.19 | 31.38 |
| PGSC0003DMT400039340 | Potato | plastid | 35.4 | 31.01 |
| AT1G65690.1 | Thale cress | plasma membrane, plastid | 34.51 | 30.95 |
| Solyc03g019920.1.1 | Tomato | plastid | 33.19 | 30.36 |
| PGSC0003DMT400050761 | Potato | cytosol, plasma membrane, vacuole | 34.51 | 30.0 |
| AT5G36970.1 | Thale cress | nucleus, peroxisome, plasma membrane | 32.74 | 29.84 |
| KRH72891 | Soybean | nucleus, peroxisome, plasma membrane | 33.63 | 29.8 |
| Bra027969.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 35.4 | 29.74 |
| VIT_04s0069g01010.t01 | Wine grape | plasma membrane | 32.74 | 29.48 |
| KRH17244 | Soybean | cytosol, peroxisome, plasma membrane | 33.63 | 29.23 |
| CDY53530 | Canola | cytosol, nucleus, plasma membrane | 32.74 | 29.02 |
| Bra028103.1-P | Field mustard | cytosol, nucleus, plasma membrane | 32.74 | 29.02 |
| CDX74604 | Canola | cytosol, nucleus, plasma membrane | 32.3 | 28.63 |
| PGSC0003DMT400055257 | Potato | plasma membrane, plastid | 31.42 | 27.41 |
| TraesCS2D01G561400.1 | Wheat | peroxisome | 30.53 | 27.27 |
| VIT_16s0039g00340.t01 | Wine grape | cytosol | 34.51 | 27.08 |
| Solyc02g036480.1.1 | Tomato | nucleus | 30.09 | 26.56 |
| TraesCS5D01G176000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 23.89 | 25.84 |
| CDY26995 | Canola | cytosol | 32.3 | 23.78 |
| TraesCS4D01G124700.1 | Wheat | cytosol, extracellular, plasma membrane | 28.76 | 23.72 |
| Solyc02g081450.2.1 | Tomato | cytosol, plasma membrane, vacuole | 33.63 | 23.31 |
| TraesCS5D01G151200.1 | Wheat | cytosol, extracellular, plasma membrane | 27.43 | 21.75 |
| TraesCS3D01G329800.1 | Wheat | cytosol | 26.99 | 19.87 |
| CDY38564 | Canola | plasma membrane | 31.86 | 11.36 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G091900.1 | EnsemblPlantsGene:TraesCS4D01G091900 | InterPro:LEA_2 | PANTHER:PTHR31852 | PANTHER:PTHR31852:SF37 | PFAM:PF03168 |
| SEG:seg | TMHMM:TMhelix | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr4D:-:66934652..66935332
Molecular Weight (calculated)
24409.7 Da
IEP (calculated)
9.252
GRAVY (calculated)
0.111
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MPALDTIHAH NERDLEAGHA TPPSSLVTGK ARRRNSCRRF ACVALIAVAA VAIALAAFLG TLYVVLDPKM PLYTVHALNV TAFGMDDDMT ARARFDAAVR
101: FENPNRAIGI SYEEGSSLAV WYCGYRLSEG ALPAFYQGHR DAAVVHVAMS EARLHGTGVV EAMRHVNAAG GELPLVFRGE VPVRVKVGPV TTGKVTPRVR
201: CDLVLDRLST EGGIGVKRMS CKLKLW
101: FENPNRAIGI SYEEGSSLAV WYCGYRLSEG ALPAFYQGHR DAAVVHVAMS EARLHGTGVV EAMRHVNAAG GELPLVFRGE VPVRVKVGPV TTGKVTPRVR
201: CDLVLDRLST EGGIGVKRMS CKLKLW
001: MGDQQKIHPV LQMEANKTKT TTPAPGKTVL LPVQRPIPPP VIPSKNRNMC CKIFCWVLSL LVIALIALAI AVAVVYFVFH PKLPSYEVNS LRVTNLGINL
101: DLSLSAEFKV EITARNPNEK IGIYYEKGGH IGVWYDKTKL CEGPIPRFYQ GHRNVTKLNV ALTGRAQYGN TVLAALQQQQ QTGRVPLDLK VNAPVAIKLG
201: NLKMKKIRIL GSCKLVVDSL STNNNINIKA SDCSFKAKL
101: DLSLSAEFKV EITARNPNEK IGIYYEKGGH IGVWYDKTKL CEGPIPRFYQ GHRNVTKLNV ALTGRAQYGN TVLAALQQQQ QTGRVPLDLK VNAPVAIKLG
201: NLKMKKIRIL GSCKLVVDSL STNNNINIKA SDCSFKAKL
Arabidopsis Description
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [Source:UniProtKB/TrEMBL;Acc:Q9SLI0]
SUBAcon: [peroxisome,plastid,cytosol,plasma membrane]
SUBAcon: [peroxisome,plastid,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.