Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol, peroxisome
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G095400.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 93.81 | 91.38 |
| TraesCS4D01G091900.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 91.15 | 91.15 |
| HORVU4Hr1G018760.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 92.04 | 88.89 |
| EES06862 | Sorghum | peroxisome | 72.12 | 69.07 |
| HORVU4Hr1G018720.1 | Barley | cytosol | 46.9 | 67.95 |
| Os02t0507900-00 | Rice | cytosol | 66.37 | 60.0 |
| GSMUA_Achr5P11970_001 | Banana | cytosol, peroxisome, plasma membrane | 41.59 | 38.21 |
| TraesCS1B01G183500.1 | Wheat | cytosol, nucleus, plasma membrane | 44.69 | 37.97 |
| KRH30725 | Soybean | cytosol, nucleus, plasma membrane | 35.4 | 32.52 |
| KRG98056 | Soybean | cytosol, peroxisome, plasma membrane | 34.51 | 31.97 |
| KRH34277 | Soybean | plasma membrane | 34.51 | 30.95 |
| KRG92519 | Soybean | cytosol | 33.63 | 30.4 |
| Bra039737.1-P | Field mustard | plasma membrane, plastid | 33.19 | 30.24 |
| CDY16419 | Canola | plastid | 33.19 | 30.24 |
| CDY72163 | Canola | plastid | 33.19 | 30.24 |
| AT1G65690.1 | Thale cress | plasma membrane, plastid | 33.19 | 29.76 |
| AT5G36970.1 | Thale cress | nucleus, peroxisome, plasma membrane | 32.3 | 29.44 |
| KRH72891 | Soybean | nucleus, peroxisome, plasma membrane | 33.19 | 29.41 |
| AT1G54540.1 | Thale cress | cytosol, peroxisome, plasma membrane, plastid | 30.97 | 29.29 |
| PGSC0003DMT400050761 | Potato | cytosol, plasma membrane, vacuole | 33.63 | 29.23 |
| VIT_04s0069g01010.t01 | Wine grape | plasma membrane | 32.3 | 29.08 |
| PGSC0003DMT400039340 | Potato | plastid | 33.19 | 29.07 |
| CDY53530 | Canola | cytosol, nucleus, plasma membrane | 32.74 | 29.02 |
| Bra028103.1-P | Field mustard | cytosol, nucleus, plasma membrane | 32.74 | 29.02 |
| CDX74604 | Canola | cytosol, nucleus, plasma membrane | 32.3 | 28.63 |
| KRH17244 | Soybean | cytosol, peroxisome, plasma membrane | 32.74 | 28.46 |
| Solyc03g019920.1.1 | Tomato | plastid | 30.97 | 28.34 |
| Bra027969.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 33.19 | 27.88 |
| VIT_16s0039g00340.t01 | Wine grape | cytosol | 34.96 | 27.43 |
| TraesCS2B01G591000.1 | Wheat | peroxisome | 30.09 | 26.77 |
| PGSC0003DMT400055257 | Potato | plasma membrane, plastid | 30.53 | 26.64 |
| TraesCS5B01G168700.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 23.89 | 25.84 |
| Solyc02g036480.1.1 | Tomato | nucleus | 29.2 | 25.78 |
| CDY26995 | Canola | cytosol | 31.86 | 23.45 |
| Solyc02g081450.2.1 | Tomato | cytosol, plasma membrane, vacuole | 33.19 | 23.01 |
| TraesCS1B01G251100.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 24.34 | 21.91 |
| TraesCS4B01G128000.1 | Wheat | cytosol, extracellular, plasma membrane | 26.55 | 21.9 |
| TraesCS5B01G139500.1 | Wheat | cytosol, extracellular, peroxisome | 24.34 | 19.43 |
| TraesCS3B01G367900.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome, plastid | 26.99 | 18.48 |
| CDY38564 | Canola | plasma membrane | 31.86 | 11.36 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G095300.1 | EnsemblPlantsGene:TraesCS4B01G095300 | InterPro:LEA_2 | PANTHER:PTHR31852 | PANTHER:PTHR31852:SF37 | PFAM:PF03168 |
| SEG:seg | TMHMM:TMhelix | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr4B:+:99040630..99041310
Molecular Weight (calculated)
24145.2 Da
IEP (calculated)
7.582
GRAVY (calculated)
0.121
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MAALDTIHEH NERDLEAGHA TPPSSLVTGK ARRRNSCRRF ACVALLIVAA VGVVLAAFLG ALYVALDPKM PLYTVHALNV TAFGMDDDMT ARAQFDAAVQ
101: FENPNRAIGI SYEEGSSLAV WYGGYRLSEG ALPAFYQGHG DAAVVHVAMS EARLGGTGVV EAMRHVNGAG GELPLVFQGE VPVRVKVGPV TTGKVTPRVR
201: CDLVLDKLST EGRIGVNRMS CNLKLW
101: FENPNRAIGI SYEEGSSLAV WYGGYRLSEG ALPAFYQGHG DAAVVHVAMS EARLGGTGVV EAMRHVNGAG GELPLVFQGE VPVRVKVGPV TTGKVTPRVR
201: CDLVLDKLST EGRIGVNRMS CNLKLW
001: MSQHQKIYPV QDPEAATARP TAPLVPRGSS RSEHGDPSKV PLNQRPQRFV PLAPPKKRRS CCCRCFCYTF CFLLLLVVAV GASIGILYLV FKPKLPDYSI
101: DRLQLTRFAL NQDSSLTTAF NVTITAKNPN EKIGIYYEDG SKITVWYMEH QLSNGSLPKF YQGHENTTVI YVEMTGQTQN ASGLRTTLEE QQQRTGNIPL
201: RIRVNQPVRV KFGKLKLFEV RFLVRCGVFV DSLATNNVIK IQSSSCKFRL RL
101: DRLQLTRFAL NQDSSLTTAF NVTITAKNPN EKIGIYYEDG SKITVWYMEH QLSNGSLPKF YQGHENTTVI YVEMTGQTQN ASGLRTTLEE QQQRTGNIPL
201: RIRVNQPVRV KFGKLKLFEV RFLVRCGVFV DSLATNNVIK IQSSSCKFRL RL
Arabidopsis Description
NHL6NDR1/HIN1-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LD98]
SUBAcon: [plasma membrane,plastid]
SUBAcon: [plasma membrane,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.