Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 1
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G216800.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 60.4 | 68.33 |
| TraesCS4A01G217000.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome, plastid | 60.0 | 66.37 |
| TraesCS4B01G095300.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 60.0 | 66.37 |
| TraesCS4D01G092200.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 59.6 | 66.22 |
| TraesCS4D01G091900.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 59.6 | 65.93 |
| HORVU4Hr1G018760.1 | Barley | cytosol, endoplasmic reticulum, peroxisome | 61.2 | 65.38 |
| TraesCS4B01G095400.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome | 60.4 | 65.09 |
| EES06862 | Sorghum | peroxisome | 56.4 | 59.75 |
| HORVU4Hr1G018720.1 | Barley | cytosol | 26.8 | 42.95 |
| GSMUA_Achr5P11970_001 | Banana | cytosol, peroxisome, plasma membrane | 37.2 | 37.8 |
| VIT_04s0069g01010.t01 | Wine grape | plasma membrane | 32.0 | 31.87 |
| Solyc03g019920.1.1 | Tomato | plastid | 30.4 | 30.77 |
| KRG98056 | Soybean | cytosol, peroxisome, plasma membrane | 30.0 | 30.74 |
| PGSC0003DMT400039340 | Potato | plastid | 31.6 | 30.62 |
| KRH34277 | Soybean | plasma membrane | 30.8 | 30.56 |
| KRH30725 | Soybean | cytosol, nucleus, plasma membrane | 30.0 | 30.49 |
| KRG92519 | Soybean | cytosol | 30.0 | 30.0 |
| CDY72163 | Canola | plastid | 29.2 | 29.44 |
| Solyc02g036480.1.1 | Tomato | nucleus | 30.0 | 29.3 |
| AT1G54540.1 | Thale cress | cytosol, peroxisome, plasma membrane, plastid | 28.0 | 29.29 |
| KRH17244 | Soybean | cytosol, peroxisome, plasma membrane | 30.4 | 29.23 |
| PGSC0003DMT400050761 | Potato | cytosol, plasma membrane, vacuole | 30.4 | 29.23 |
| CDY16419 | Canola | plastid | 28.8 | 29.03 |
| AT5G36970.1 | Thale cress | nucleus, peroxisome, plasma membrane | 28.8 | 29.03 |
| CDY53530 | Canola | cytosol, nucleus, plasma membrane | 29.6 | 29.02 |
| KRH72891 | Soybean | nucleus, peroxisome, plasma membrane | 29.6 | 29.02 |
| Bra028103.1-P | Field mustard | cytosol, nucleus, plasma membrane | 29.6 | 29.02 |
| AT1G65690.1 | Thale cress | plasma membrane, plastid | 29.2 | 28.97 |
| PGSC0003DMT400055257 | Potato | plasma membrane, plastid | 30.0 | 28.96 |
| Bra039737.1-P | Field mustard | plasma membrane, plastid | 28.4 | 28.63 |
| CDX74604 | Canola | cytosol, nucleus, plasma membrane | 29.2 | 28.63 |
| Bra027969.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 29.6 | 27.51 |
| VIT_16s0039g00340.t01 | Wine grape | cytosol | 30.8 | 26.74 |
| Os09t0267400-01 | Rice | plasma membrane | 22.4 | 26.67 |
| Os08t0324200-01 | Rice | cytosol | 25.6 | 26.45 |
| Os04t0677300-01 | Rice | plastid | 26.4 | 25.88 |
| CDY26995 | Canola | cytosol | 29.6 | 24.1 |
| Solyc02g081450.2.1 | Tomato | cytosol, plasma membrane, vacuole | 29.6 | 22.7 |
| Os11t0130400-01 | Rice | extracellular, peroxisome, vacuole | 23.2 | 21.01 |
| Os12t0127200-01 | Rice | extracellular, plasma membrane, vacuole | 22.4 | 20.36 |
| Os01t0812100-01 | Rice | cytosol, mitochondrion, peroxisome | 26.4 | 19.02 |
| CDY38564 | Canola | plasma membrane | 28.4 | 11.2 |
Protein Annotations
| EnsemblPlants:Os02t0507900-00 | EnsemblPlantsGene:Os02g0507900 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:LEA_2 |
| PANTHER:PTHR31852 | PANTHER:PTHR31852:SF37 | PFAM:PF03168 | ProteinID:BAD23189.1 | ProteinID:BAD23648.1 | ProteinID:BAF08837.2 |
| ProteinID:BAS78840.1 | ProteinID:EAZ23176.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI00003B057B | UniProt:Q6K2G8 |
| MapMan:35.1 | : | : | : | : | : |
Description
Late embryogenesis abundant protein, LEA-14 domain containing protein. (Os02t0507900-00)
Coordinates
chr2:-:18137316..18138068
Molecular Weight (calculated)
26867.2 Da
IEP (calculated)
6.506
GRAVY (calculated)
-0.202
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFHDHVTFQ DDEIDLEAGH TPPPPPPPAD HETKLPKRQQ QQRKKKKKRG CCCRLACAAL VLVAAVAAAA GALYLALDPR LPRYAIESLT VQAFDMDYDG
101: HGGEYGYGDP QLTARASFDA AVRFENPNRA IDISYEEGSS LAVFYGGHRL SEGALPAFYQ GHGDAGVVHV AMGDATLEGA GAVAEAMQQV VGGGGELPLV
201: FRGEVPVRVK VGPITTGKLT PTIRCDLVLD RLSTEGEIRV KNMSCKIKLW
101: HGGEYGYGDP QLTARASFDA AVRFENPNRA IDISYEEGSS LAVFYGGHRL SEGALPAFYQ GHGDAGVVHV AMGDATLEGA GAVAEAMQQV VGGGGELPLV
201: FRGEVPVRVK VGPITTGKLT PTIRCDLVLD RLSTEGEIRV KNMSCKIKLW
001: MSQHQKIYPV QDPEAATARP TAPLVPRGSS RSEHGDPSKV PLNQRPQRFV PLAPPKKRRS CCCRCFCYTF CFLLLLVVAV GASIGILYLV FKPKLPDYSI
101: DRLQLTRFAL NQDSSLTTAF NVTITAKNPN EKIGIYYEDG SKITVWYMEH QLSNGSLPKF YQGHENTTVI YVEMTGQTQN ASGLRTTLEE QQQRTGNIPL
201: RIRVNQPVRV KFGKLKLFEV RFLVRCGVFV DSLATNNVIK IQSSSCKFRL RL
101: DRLQLTRFAL NQDSSLTTAF NVTITAKNPN EKIGIYYEDG SKITVWYMEH QLSNGSLPKF YQGHENTTVI YVEMTGQTQN ASGLRTTLEE QQQRTGNIPL
201: RIRVNQPVRV KFGKLKLFEV RFLVRCGVFV DSLATNNVIK IQSSSCKFRL RL
Arabidopsis Description
NHL6NDR1/HIN1-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LD98]
SUBAcon: [plasma membrane,plastid]
SUBAcon: [plasma membrane,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.