Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- golgi 2
- plasma membrane 3
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
28056797
|
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER98613 | Sorghum | endoplasmic reticulum, plasma membrane, plastid | 78.57 | 79.33 |
| Zm00001d005265_P001 | Maize | endoplasmic reticulum, plasma membrane, plastid | 77.62 | 78.37 |
| TraesCS5A01G171200.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 75.24 | 75.6 |
| TraesCS5D01G176000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 73.81 | 74.16 |
| TraesCS5B01G168700.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 73.33 | 73.68 |
| HORVU5Hr1G052650.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 71.9 | 68.64 |
| Os08t0324200-01 | Rice | cytosol | 66.67 | 57.85 |
| PGSC0003DMT400047270 | Potato | cytosol | 37.14 | 36.28 |
| PGSC0003DMT400047271 | Potato | cytosol, golgi, plasma membrane | 31.9 | 29.91 |
| KRH22411 | Soybean | cytosol, endoplasmic reticulum, plasma membrane | 30.95 | 28.02 |
| KRH26927 | Soybean | cytosol | 21.9 | 27.71 |
| Solyc07g054250.2.1 | Tomato | cytosol, nucleus, plastid | 32.38 | 25.09 |
| Os04t0677300-01 | Rice | plastid | 29.52 | 24.31 |
| Os02t0507900-00 | Rice | cytosol | 26.67 | 22.4 |
| Os11t0130400-01 | Rice | extracellular, peroxisome, vacuole | 29.05 | 22.1 |
| Os12t0127200-01 | Rice | extracellular, plasma membrane, vacuole | 28.57 | 21.82 |
| Os01t0812100-01 | Rice | cytosol, mitochondrion, peroxisome | 34.29 | 20.75 |
Protein Annotations
| EnsemblPlants:Os09t0267400-01 | EnsemblPlantsGene:Os09g0267400 | EntrezGene:4346564 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:LEA_2 | PANTHER:PTHR31852 | PANTHER:PTHR31852:SF30 | PFAM:PF03168 | ProteinID:BAD26256.1 | ProteinID:BAF24635.1 |
| ProteinID:BAT07143.1 | RefSeq:XP_015611463.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI00003B466D | UniProt:Q6H4U3 |
| MapMan:35.1 | : | : | : | : | : |
Description
Harpin-induced 1 domain containing protein. (Os09t0267400-01)
Coordinates
chr9:-:5090401..5091421
Molecular Weight (calculated)
22638.2 Da
IEP (calculated)
7.676
GRAVY (calculated)
0.089
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKRSAPRYP DDGGGGGGGI CCVLCWCCCF LFLIVAALAG AAAYALFLYK PKAPSYSVSN MSVSQFDFNS NDLTLYTKLV ATVRAENPNE MIGIIYGDGS
101: RTVVSYRGTP LCSGHLPTFY QGFKNVTVME ISMEGRHGFG SGLQSALEES EKEGNVPLDV FVSVPVSLRF GSFDVREVRV NVHCALVVDS ISPKKKPTIK
201: SATYQGNVEF
101: RTVVSYRGTP LCSGHLPTFY QGFKNVTVME ISMEGRHGFG SGLQSALEES EKEGNVPLDV FVSVPVSLRF GSFDVREVRV NVHCALVVDS ISPKKKPTIK
201: SATYQGNVEF
001: MSQHQKIYPV QDPEAATARP TAPLVPRGSS RSEHGDPSKV PLNQRPQRFV PLAPPKKRRS CCCRCFCYTF CFLLLLVVAV GASIGILYLV FKPKLPDYSI
101: DRLQLTRFAL NQDSSLTTAF NVTITAKNPN EKIGIYYEDG SKITVWYMEH QLSNGSLPKF YQGHENTTVI YVEMTGQTQN ASGLRTTLEE QQQRTGNIPL
201: RIRVNQPVRV KFGKLKLFEV RFLVRCGVFV DSLATNNVIK IQSSSCKFRL RL
101: DRLQLTRFAL NQDSSLTTAF NVTITAKNPN EKIGIYYEDG SKITVWYMEH QLSNGSLPKF YQGHENTTVI YVEMTGQTQN ASGLRTTLEE QQQRTGNIPL
201: RIRVNQPVRV KFGKLKLFEV RFLVRCGVFV DSLATNNVIK IQSSSCKFRL RL
Arabidopsis Description
NHL6NDR1/HIN1-like protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8LD98]
SUBAcon: [plasma membrane,plastid]
SUBAcon: [plasma membrane,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.